Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Clrn3Q8BHH8 Gm7432-201ENSMUST00000210343 879 ntBASIC21.42■■□□□ 1.02
Clrn3Q8BHH8 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Clrn3Q8BHH8 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Clrn3Q8BHH8 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Clrn3Q8BHH8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Clrn3Q8BHH8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Clrn3Q8BHH8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Clrn3Q8BHH8 Gm37136-201ENSMUST00000194368 194 ntBASIC21.4■■□□□ 1.02
Clrn3Q8BHH8 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.4■■□□□ 1.02
Clrn3Q8BHH8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Clrn3Q8BHH8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Clrn3Q8BHH8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Clrn3Q8BHH8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Clrn3Q8BHH8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Clrn3Q8BHH8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Clrn3Q8BHH8 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Clrn3Q8BHH8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Clrn3Q8BHH8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Clrn3Q8BHH8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn3Q8BHH8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn3Q8BHH8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn3Q8BHH8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Clrn3Q8BHH8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.36■■□□□ 1.01
Clrn3Q8BHH8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Clrn3Q8BHH8 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Clrn3Q8BHH8 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Clrn3Q8BHH8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Clrn3Q8BHH8 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.34■■□□□ 1.01
Clrn3Q8BHH8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Clrn3Q8BHH8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Clrn3Q8BHH8 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Clrn3Q8BHH8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.32■■□□□ 1
Clrn3Q8BHH8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.32■■□□□ 1
Clrn3Q8BHH8 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clrn3Q8BHH8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.31■■□□□ 1
Clrn3Q8BHH8 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clrn3Q8BHH8 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clrn3Q8BHH8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clrn3Q8BHH8 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn3Q8BHH8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Gm11599-201ENSMUST00000118720 878 ntBASIC21.3■■□□□ 1
Clrn3Q8BHH8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.3■■□□□ 1
Clrn3Q8BHH8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.29■■□□□ 1
Clrn3Q8BHH8 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn3Q8BHH8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clrn3Q8BHH8 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.29■■□□□ 1
Clrn3Q8BHH8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.29■■□□□ 1
Clrn3Q8BHH8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Clrn3Q8BHH8 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Clrn3Q8BHH8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Clrn3Q8BHH8 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Clrn3Q8BHH8 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn3Q8BHH8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn3Q8BHH8 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clrn3Q8BHH8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.25■□□□□ 0.99
Clrn3Q8BHH8 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
Clrn3Q8BHH8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clrn3Q8BHH8 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Clrn3Q8BHH8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn3Q8BHH8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clrn3Q8BHH8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clrn3Q8BHH8 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Clrn3Q8BHH8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clrn3Q8BHH8 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Clrn3Q8BHH8 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clrn3Q8BHH8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Clrn3Q8BHH8 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clrn3Q8BHH8 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.21■□□□□ 0.99
Clrn3Q8BHH8 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.2■□□□□ 0.98
Clrn3Q8BHH8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.2■□□□□ 0.98
Clrn3Q8BHH8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.2■□□□□ 0.98
Clrn3Q8BHH8 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clrn3Q8BHH8 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn3Q8BHH8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn3Q8BHH8 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clrn3Q8BHH8 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.19■□□□□ 0.98
Clrn3Q8BHH8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Clrn3Q8BHH8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms