Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Hoxd3P09027 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hoxd3P09027 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hoxd3P09027 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hoxd3P09027 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hoxd3P09027 AC122317.2-201ENSMUST00000218708 1248 ntBASIC17.76■□□□□ 0.43
Hoxd3P09027 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Hoxd3P09027 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Hoxd3P09027 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Hoxd3P09027 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hoxd3P09027 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC17.74■□□□□ 0.43
Hoxd3P09027 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Hoxd3P09027 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hoxd3P09027 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hoxd3P09027 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hoxd3P09027 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hoxd3P09027 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hoxd3P09027 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Hoxd3P09027 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC17.72■□□□□ 0.43
Hoxd3P09027 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC17.72■□□□□ 0.43
Hoxd3P09027 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hoxd3P09027 Cap2-205ENSMUST00000225824 1634 ntBASIC17.72■□□□□ 0.43
Hoxd3P09027 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Hoxd3P09027 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC17.71■□□□□ 0.43
Hoxd3P09027 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hoxd3P09027 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hoxd3P09027 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hoxd3P09027 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hoxd3P09027 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hoxd3P09027 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hoxd3P09027 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 AC153911.1-201ENSMUST00000220378 758 ntBASIC17.69■□□□□ 0.42
Hoxd3P09027 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hoxd3P09027 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC17.68■□□□□ 0.42
Hoxd3P09027 Gm9910-201ENSMUST00000195385 1550 ntBASIC17.68■□□□□ 0.42
Hoxd3P09027 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC17.68■□□□□ 0.42
Hoxd3P09027 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hoxd3P09027 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Hoxd3P09027 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.68■□□□□ 0.42
Hoxd3P09027 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Hoxd3P09027 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hoxd3P09027 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hoxd3P09027 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hoxd3P09027 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hoxd3P09027 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Hoxd3P09027 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC17.66■□□□□ 0.42
Hoxd3P09027 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Hoxd3P09027 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Hoxd3P09027 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Hoxd3P09027 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hoxd3P09027 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hoxd3P09027 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hoxd3P09027 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
Hoxd3P09027 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
Hoxd3P09027 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Hoxd3P09027 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC17.64■□□□□ 0.41
Hoxd3P09027 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Hoxd3P09027 Terc-201ENSMUST00000082862 423 ntBASIC17.64■□□□□ 0.41
Hoxd3P09027 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hoxd3P09027 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC17.63■□□□□ 0.41
Hoxd3P09027 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Hoxd3P09027 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hoxd3P09027 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.63■□□□□ 0.41
Hoxd3P09027 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hoxd3P09027 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC17.62■□□□□ 0.41
Hoxd3P09027 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hoxd3P09027 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hoxd3P09027 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hoxd3P09027 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hoxd3P09027 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hoxd3P09027 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC17.61■□□□□ 0.41
Hoxd3P09027 Gm12366-201ENSMUST00000121722 873 ntBASIC17.61■□□□□ 0.41
Hoxd3P09027 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC17.61■□□□□ 0.41
Hoxd3P09027 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hoxd3P09027 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC17.61■□□□□ 0.41
Hoxd3P09027 Gm5786-201ENSMUST00000085368 882 ntBASIC17.61■□□□□ 0.41
Hoxd3P09027 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hoxd3P09027 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hoxd3P09027 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms