Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.49■□□□□ 0.39
Trbv17A0A140T8P8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv17A0A140T8P8 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv17A0A140T8P8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv17A0A140T8P8 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trbv17A0A140T8P8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv17A0A140T8P8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv17A0A140T8P8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv17A0A140T8P8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Gm7432-201ENSMUST00000210343 879 ntBASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trbv17A0A140T8P8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv17A0A140T8P8 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv17A0A140T8P8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv17A0A140T8P8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv17A0A140T8P8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv17A0A140T8P8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv17A0A140T8P8 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.36■□□□□ 0.37
Trbv17A0A140T8P8 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv17A0A140T8P8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Gm37136-201ENSMUST00000194368 194 ntBASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv17A0A140T8P8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
Trbv17A0A140T8P8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv17A0A140T8P8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv17A0A140T8P8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Gm11599-201ENSMUST00000118720 878 ntBASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv17A0A140T8P8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv17A0A140T8P8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv17A0A140T8P8 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv17A0A140T8P8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv17A0A140T8P8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms