RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 DDX3XO00571 662 aaKnown RBP eCLIP24.5■■□□□ 1.511e-27■■■□□ 18.3
CCDC47-204ENST00000582252 SF3B4Q15427 424 aaKnown RBP eCLIP19.68■□□□□ 0.748e-19■■■■■ 28.8
CCDC47-204ENST00000582252 ZNF622Q969S3 477 aaKnown RBP eCLIP26.57■■□□□ 1.842e-12■■■■□ 25.4
CCDC47-204ENST00000582252 PPIGQ13427 754 aaKnown RBP eCLIP23.31■■□□□ 1.321e-10■■□□□ 11.6
CCDC47-204ENST00000582252 RPS3P23396 243 aaKnown RBP eCLIP22.48■■□□□ 1.197e-10■■■■□ 20.1
CCDC47-204ENST00000582252 QKIQ96PU8 341 aaKnown RBP eCLIP23.46■■□□□ 1.351e-9■■■■■ 189.5
CCDC47-204ENST00000582252 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.22■■■□□ 2.912e-9■■■■□ 23.9
CCDC47-204ENST00000582252 TRA2AQ13595 282 aaKnown RBP eCLIP20.71■□□□□ 0.913e-9■□□□□ 10.9
CCDC47-204ENST00000582252 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.3■■□□□ 1.649e-9■□□□□ 10.6
CCDC47-204ENST00000582252 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.49■■■□□ 2.152e-8■■■□□ 16.9
CCDC47-204ENST00000582252 NIPBLQ6KC79 2804 aaeCLIP17.02■□□□□ 0.316e-8■□□□□ 9.1
CCDC47-204ENST00000582252 AQRO60306 1485 aaKnown RBP eCLIP35.54■■■■□ 3.281e-7■■■■□ 23.2
CCDC47-204ENST00000582252 SND1Q7KZF4 910 aaKnown RBP eCLIP24.15■■□□□ 1.461e-7■■■■■ 29.2
CCDC47-204ENST00000582252 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.3■■□□□ 1.482e-7■■■□□ 17.9
CCDC47-204ENST00000582252 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.96■■■□□ 2.713e-7■■□□□ 14
CCDC47-204ENST00000582252 FXR2P51116 673 aaKnown RBP eCLIP25.51■■□□□ 1.673e-7■■■■□ 23.2
CCDC47-204ENST00000582252 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.59■□□□□ 0.894e-7■■■□□ 16
CCDC47-204ENST00000582252 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.71■■□□□ 1.235e-7■■■■□ 24.2
CCDC47-204ENST00000582252 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.95■□□□□ 0.466e-7■■■□□ 17.9
CCDC47-204ENST00000582252 U2AF2P26368 475 aaKnown RBP eCLIP26.21■■□□□ 1.791e-6■■■■□ 21
CCDC47-204ENST00000582252 TARDBPQ13148 414 aaKnown RBP eCLIP21.15■□□□□ 0.982e-6■■■■■ 32.5
CCDC47-204ENST00000582252 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.32■■□□□ 1.322e-6■■■■□ 20.1
CCDC47-204ENST00000582252 PUM1Q14671 1186 aaKnown RBP eCLIP21.3■■□□□ 12e-6■□□□□ 10.8
CCDC47-204ENST00000582252 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.99■■□□□ 1.913e-6■□□□□ 8.5
CCDC47-204ENST00000582252 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.38■■□□□ 1.173e-6■■■■■ 45.3
CCDC47-204ENST00000582252 RBM22Q9NW64 420 aaKnown RBP eCLIP23.06■■□□□ 1.283e-6■■■■□ 21.1
CCDC47-204ENST00000582252 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.33■■□□□ 1.496e-6■■■□□ 15
CCDC47-204ENST00000582252 GPKOWQ92917 476 aaPredicted RBP eCLIP25.83■■□□□ 1.736e-6■■□□□ 12
CCDC47-204ENST00000582252 EFTUD2Q15029 972 aaKnown RBP eCLIP23.29■■□□□ 1.328e-6■□□□□ 8.1
CCDC47-204ENST00000582252 ILF3Q12906 894 aaKnown RBP eCLIP21.52■■□□□ 1.048e-6■■□□□ 11.6
Retrieved 30 of 30 RNA–protein pairs in 20.7 ms