RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.63■□□□□ 0.253e-6■■■■■ 91.3
HERPUD1-219ENST00000570273 AQRO60306 1485 aaKnown RBP eCLIP25.38■■□□□ 1.654e-7■■■■■ 42.8
HERPUD1-219ENST00000570273 DDX42Q86XP3 938 aaKnown RBP eCLIP15.94■□□□□ 0.142e-8■■■■■ 39.1
HERPUD1-219ENST00000570273 RBFOX2O43251 390 aaKnown RBP eCLIP12.45□□□□□ -0.424e-14■■■■■ 35.7
HERPUD1-219ENST00000570273 RBM22Q9NW64 420 aaKnown RBP eCLIP15.71■□□□□ 0.116e-8■■■■■ 33.4
HERPUD1-219ENST00000570273 SRSF1Q07955 248 aaKnown RBP eCLIP13.28□□□□□ -0.283e-9■■■■■ 32.6
HERPUD1-219ENST00000570273 DDX3XO00571 662 aaKnown RBP eCLIP16.39■□□□□ 0.213e-18■■■■□ 26.5
HERPUD1-219ENST00000570273 RBM15Q96T37 977 aaKnown RBP eCLIP15.64■□□□□ 0.092e-8■■■■□ 24.1
HERPUD1-219ENST00000570273 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.12■□□□□ 0.338e-7■■■■□ 22.8
HERPUD1-219ENST00000570273 TIAL1Q01085 375 aaKnown RBP eCLIP15.2■□□□□ 0.023e-6■■■■□ 22.7
HERPUD1-219ENST00000570273 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.62■■□□□ 1.376e-6■■■■□ 21.5
HERPUD1-219ENST00000570273 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.59□□□□□ -0.076e-56■■■■□ 21.3
HERPUD1-219ENST00000570273 SF3B4Q15427 424 aaKnown RBP eCLIP13.72□□□□□ -0.212e-6■■■■□ 20
HERPUD1-219ENST00000570273 EFTUD2Q15029 972 aaKnown RBP eCLIP15.43■□□□□ 0.068e-9■■■■□ 19.7
HERPUD1-219ENST00000570273 GPKOWQ92917 476 aaPredicted RBP eCLIP17.81■□□□□ 0.441e-6■■■■□ 19.7
HERPUD1-219ENST00000570273 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.07□□□□□ -0.162e-8■■■□□ 18.7
HERPUD1-219ENST00000570273 PABPC4Q13310 644 aaKnown RBP eCLIP17.75■□□□□ 0.436e-14■■■□□ 18
HERPUD1-219ENST00000570273 SND1Q7KZF4 910 aaKnown RBP eCLIP16.06■□□□□ 0.164e-8■■■□□ 18
HERPUD1-219ENST00000570273 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18■□□□□ 0.472e-12■■■□□ 17.9
HERPUD1-219ENST00000570273 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.52□□□□□ -0.43e-7■■■□□ 17.7
HERPUD1-219ENST00000570273 HNRNPKP61978 463 aaKnown RBP eCLIP15.04■□□□□ -08e-13■■■□□ 16.8
HERPUD1-219ENST00000570273 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.49■□□□□ 0.075e-9■■■□□ 15.6
HERPUD1-219ENST00000570273 SMNDC1O75940 238 aaKnown RBP eCLIP13.7□□□□□ -0.227e-11■■■□□ 15.1
HERPUD1-219ENST00000570273 DDX6P26196 483 aaKnown RBP eCLIP16.01■□□□□ 0.154e-7■■■□□ 15.1
HERPUD1-219ENST00000570273 TARDBPQ13148 414 aaKnown RBP eCLIP14.54□□□□□ -0.082e-7■■■□□ 14.9
HERPUD1-219ENST00000570273 U2AF2P26368 475 aaKnown RBP eCLIP17.68■□□□□ 0.425e-8■■□□□ 14.2
HERPUD1-219ENST00000570273 TIA1P31483 386 aaKnown RBP eCLIP14.69□□□□□ -0.067e-7■■□□□ 14.1
HERPUD1-219ENST00000570273 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.54■□□□□ 0.247e-9■■□□□ 13.7
HERPUD1-219ENST00000570273 PPIGQ13427 754 aaKnown RBP eCLIP16.62■□□□□ 0.251e-7■■□□□ 13.6
HERPUD1-219ENST00000570273 G3BP1Q13283 466 aaKnown RBP eCLIP19.09■□□□□ 0.653e-10■■□□□ 13.1
HERPUD1-219ENST00000570273 RPS3P23396 243 aaKnown RBP eCLIP15.26■□□□□ 0.035e-7■■□□□ 12.5
HERPUD1-219ENST00000570273 SF3A3Q12874 501 aaKnown RBP eCLIP14.87□□□□□ -0.031e-8■■□□□ 12.2
HERPUD1-219ENST00000570273 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.95□□□□□ -0.185e-6■■□□□ 11.7
HERPUD1-219ENST00000570273 ZNF622Q969S3 477 aaKnown RBP eCLIP18.94■□□□□ 0.622e-6■■□□□ 11.7
HERPUD1-219ENST00000570273 KHSRPQ92945 711 aaKnown RBP eCLIP16.15■□□□□ 0.182e-11■■□□□ 11.7
HERPUD1-219ENST00000570273 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.15■□□□□ 0.54e-7■□□□□ 11
HERPUD1-219ENST00000570273 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.46■□□□□ 0.232e-7■□□□□ 10.4
HERPUD1-219ENST00000570273 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.65■□□□□ 0.582e-6■□□□□ 10.1
HERPUD1-219ENST00000570273 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.74■■□□□ 1.235e-8■□□□□ 9.6
HERPUD1-219ENST00000570273 AKAP1Q92667 903 aaKnown RBP eCLIP13.31□□□□□ -0.281e-6■□□□□ 9.6
HERPUD1-219ENST00000570273 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.79□□□□□ -0.042e-6■□□□□ 9.2
HERPUD1-219ENST00000570273 ILF3Q12906 894 aaKnown RBP eCLIP15.09■□□□□ 0.012e-6■□□□□ 9.1
Retrieved 42 of 42 RNA–protein pairs in 21.6 ms