RNA: ENST00000540865.5

SNHG1-214, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 784 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-214ENST00000540865 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.23□□□□□ -1.733e-19■■■■■ 78.9
SNHG1-214ENST00000540865 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.39□□□□□ -1.712e-11■■■■■ 59.4
SNHG1-214ENST00000540865 AQRO60306 1485 aaKnown RBP eCLIP8.8□□□□□ -13e-14■■■■■ 47.5
SNHG1-214ENST00000540865 EFTUD2Q15029 972 aaKnown RBP eCLIP4.16□□□□□ -1.742e-44■■■■■ 46.9
SNHG1-214ENST00000540865 SF3B4Q15427 424 aaKnown RBP eCLIP4.23□□□□□ -1.734e-47■■■■■ 46.5
SNHG1-214ENST00000540865 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.21□□□□□ -1.741e-8■■■■■ 36.2
SNHG1-214ENST00000540865 NOLC1Q14978 699 aaKnown RBP eCLIP4.94□□□□□ -1.621e-323■■■■■ 35.2
SNHG1-214ENST00000540865 SMNDC1O75940 238 aaKnown RBP eCLIP5.26□□□□□ -1.573e-14■■■■■ 31.4
SNHG1-214ENST00000540865 ZRANB2O95218 330 aaKnown RBP eCLIP4.41□□□□□ -1.73e-9■■■■■ 27.5
SNHG1-214ENST00000540865 NIP7Q9Y221 180 aaKnown RBP eCLIP6.22□□□□□ -1.414e-44■■■■■ 26.8
SNHG1-214ENST00000540865 SF3B1O75533 1304 aaKnown RBP eCLIP5.12□□□□□ -1.592e-7■■■■□ 22.6
SNHG1-214ENST00000540865 TIA1P31483 386 aaKnown RBP eCLIP3.93□□□□□ -1.783e-6■■■■□ 22.3
SNHG1-214ENST00000540865 NIPBLQ6KC79 2804 aaeCLIP4.65□□□□□ -1.678e-27■■■■□ 21.5
SNHG1-214ENST00000540865 TRA2AQ13595 282 aaKnown RBP eCLIP4.65□□□□□ -1.672e-56■■■■□ 20.9
SNHG1-214ENST00000540865 RBM22Q9NW64 420 aaKnown RBP eCLIP4.4□□□□□ -1.714e-10■■■■□ 19.9
SNHG1-214ENST00000540865 U2AF2P26368 475 aaKnown RBP eCLIP4.98□□□□□ -1.613e-14■■■□□ 18.8
SNHG1-214ENST00000540865 U2AF1Q01081 240 aaKnown RBP eCLIP6.05□□□□□ -1.443e-8■■■□□ 17.9
SNHG1-214ENST00000540865 KHSRPQ92945 711 aaKnown RBP eCLIP7.5□□□□□ -1.219e-13■■■□□ 17.6
SNHG1-214ENST00000540865 GPKOWQ92917 476 aaPredicted RBP eCLIP6.13□□□□□ -1.432e-31■■■□□ 17.2
SNHG1-214ENST00000540865 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.67□□□□□ -1.51e-17■■■□□ 16.6
SNHG1-214ENST00000540865 DDX42Q86XP3 938 aaKnown RBP eCLIP4.9□□□□□ -1.637e-6■■■□□ 16.5
SNHG1-214ENST00000540865 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.8□□□□□ -1.644e-59■■■□□ 16.1
SNHG1-214ENST00000540865 DDX21Q9NR30 783 aaKnown RBP eCLIP6.32□□□□□ -1.41e-323■■■□□ 15.6
SNHG1-214ENST00000540865 SF3A3Q12874 501 aaKnown RBP eCLIP3.49□□□□□ -1.856e-19■■■□□ 14.9
SNHG1-214ENST00000540865 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.86□□□□□ -1.471e-6■■□□□ 14.4
SNHG1-214ENST00000540865 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.6□□□□□ -1.836e-13■■□□□ 14.1
SNHG1-214ENST00000540865 PTBP1P26599 531 aaKnown RBP eCLIP3.28□□□□□ -1.883e-55■■□□□ 13.5
SNHG1-214ENST00000540865 DKC1O60832 514 aaKnown RBP eCLIP5.08□□□□□ -1.62e-36■■□□□ 12.6
SNHG1-214ENST00000540865 SRSF1Q07955 248 aaKnown RBP eCLIP4.93□□□□□ -1.625e-12■■□□□ 12.5
SNHG1-214ENST00000540865 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.25□□□□□ -1.572e-12■■□□□ 11.6
SNHG1-214ENST00000540865 CDC40O60508 579 aaKnown RBP eCLIP4.3□□□□□ -1.725e-11■□□□□ 11.3
SNHG1-214ENST00000540865 AARSP49588 968 aaKnown RBP eCLIP4.98□□□□□ -1.615e-21■□□□□ 9.8
SNHG1-214ENST00000540865 SLBPQ14493 270 aaKnown RBP eCLIP4.89□□□□□ -1.632e-8■□□□□ 9.6
SNHG1-214ENST00000540865 AATFQ9NY61 560 aaKnown RBP eCLIP5.62□□□□□ -1.511e-323■□□□□ 9
SNHG1-214ENST00000540865 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.28□□□□□ -1.246e-32■□□□□ 8.9
SNHG1-214ENST00000540865 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.5□□□□□ -1.692e-26■□□□□ 8.9
SNHG1-214ENST00000540865 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.58□□□□□ -1.27e-33■□□□□ 8.4
Retrieved 37 of 37 RNA–protein pairs in 26.6 ms