RNA: ENST00000537965.5

SNHG1-207, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 578 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-207ENST00000537965 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.18□□□□□ -1.581e-26■■■■■ 97.1
SNHG1-207ENST00000537965 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.86□□□□□ -1.634e-19■■■■■ 81.8
SNHG1-207ENST00000537965 SF3B4Q15427 424 aaKnown RBP eCLIP4.94□□□□□ -1.627e-52■■■■■ 54.2
SNHG1-207ENST00000537965 NOLC1Q14978 699 aaKnown RBP eCLIP5.76□□□□□ -1.491e-323■■■■■ 46.6
SNHG1-207ENST00000537965 AQRO60306 1485 aaKnown RBP eCLIP9.76□□□□□ -0.855e-14■■■■■ 43.1
SNHG1-207ENST00000537965 NIPBLQ6KC79 2804 aaeCLIP5.08□□□□□ -1.63e-42■■■■■ 41.5
SNHG1-207ENST00000537965 SMNDC1O75940 238 aaKnown RBP eCLIP6.55□□□□□ -1.362e-47■■■■■ 33.3
SNHG1-207ENST00000537965 EFTUD2Q15029 972 aaKnown RBP eCLIP4.92□□□□□ -1.623e-45■■■■■ 30.8
SNHG1-207ENST00000537965 SF3B1O75533 1304 aaKnown RBP eCLIP5.89□□□□□ -1.478e-10■■■■■ 30
SNHG1-207ENST00000537965 ZRANB2O95218 330 aaKnown RBP eCLIP5.09□□□□□ -1.593e-9■■■■■ 27.5
SNHG1-207ENST00000537965 NIP7Q9Y221 180 aaKnown RBP eCLIP7.06□□□□□ -1.286e-44■■■■□ 24.8
SNHG1-207ENST00000537965 TIA1P31483 386 aaKnown RBP eCLIP4.71□□□□□ -1.663e-6■■■■□ 22.3
SNHG1-207ENST00000537965 TRA2AQ13595 282 aaKnown RBP eCLIP5.34□□□□□ -1.552e-56■■■■□ 20.9
SNHG1-207ENST00000537965 RBM22Q9NW64 420 aaKnown RBP eCLIP5.2□□□□□ -1.585e-10■■■□□ 18.3
SNHG1-207ENST00000537965 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.87□□□□□ -1.631e-8■■■□□ 17.9
SNHG1-207ENST00000537965 GPKOWQ92917 476 aaPredicted RBP eCLIP7.77□□□□□ -1.177e-32■■■□□ 17.2
SNHG1-207ENST00000537965 DDX42Q86XP3 938 aaKnown RBP eCLIP5.68□□□□□ -1.57e-6■■■□□ 16.5
SNHG1-207ENST00000537965 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.37□□□□□ -1.554e-59■■■□□ 16.1
SNHG1-207ENST00000537965 DDX21Q9NR30 783 aaKnown RBP eCLIP7.02□□□□□ -1.291e-323■■■□□ 15.6
SNHG1-207ENST00000537965 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.55□□□□□ -1.686e-13■■□□□ 14.1
SNHG1-207ENST00000537965 PTBP1P26599 531 aaKnown RBP eCLIP3.92□□□□□ -1.783e-55■■□□□ 13.5
SNHG1-207ENST00000537965 DKC1O60832 514 aaKnown RBP eCLIP5.96□□□□□ -1.462e-36■■□□□ 13.2
SNHG1-207ENST00000537965 U2AF1Q01081 240 aaKnown RBP eCLIP7.03□□□□□ -1.287e-8■■□□□ 12.7
SNHG1-207ENST00000537965 SRSF1Q07955 248 aaKnown RBP eCLIP5.36□□□□□ -1.555e-12■■□□□ 12.5
SNHG1-207ENST00000537965 CDC40O60508 579 aaKnown RBP eCLIP4.96□□□□□ -1.627e-15■■□□□ 12.5
SNHG1-207ENST00000537965 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.27□□□□□ -1.414e-12■■□□□ 12.4
SNHG1-207ENST00000537965 KHSRPQ92945 711 aaKnown RBP eCLIP9.32□□□□□ -0.923e-16■■□□□ 12.4
SNHG1-207ENST00000537965 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.34□□□□□ -1.397e-26■□□□□ 11.3
SNHG1-207ENST00000537965 U2AF2P26368 475 aaKnown RBP eCLIP5.72□□□□□ -1.494e-14■□□□□ 9.9
SNHG1-207ENST00000537965 AARSP49588 968 aaKnown RBP eCLIP5.75□□□□□ -1.495e-21■□□□□ 9.8
SNHG1-207ENST00000537965 SLBPQ14493 270 aaKnown RBP eCLIP5.99□□□□□ -1.452e-8■□□□□ 9.6
SNHG1-207ENST00000537965 AATFQ9NY61 560 aaKnown RBP eCLIP6.48□□□□□ -1.371e-323■□□□□ 9
SNHG1-207ENST00000537965 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.22□□□□□ -1.096e-32■□□□□ 8.9
SNHG1-207ENST00000537965 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.39□□□□□ -1.552e-26■□□□□ 8.9
SNHG1-207ENST00000537965 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.55□□□□□ -1.361e-6■□□□□ 8.4
Retrieved 35 of 35 RNA–protein pairs in 24 ms