RNA: ENST00000533129.5

CAPN1-224, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CAPN1, Length 2,792 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-224ENST00000533129 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.39□□□□□ -0.117e-22■■■■■ 89.9
CAPN1-224ENST00000533129 SF3B1O75533 1304 aaKnown RBP eCLIP15.29■□□□□ 0.043e-6■■■■■ 68.7
CAPN1-224ENST00000533129 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.59■□□□□ 0.091e-7■■■■■ 67.7
CAPN1-224ENST00000533129 AATFQ9NY61 560 aaKnown RBP eCLIP16.7■□□□□ 0.266e-6■■■■■ 54.7
CAPN1-224ENST00000533129 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.13■□□□□ 0.173e-6■■■■■ 38.5
CAPN1-224ENST00000533129 DDX3XO00571 662 aaKnown RBP eCLIP16■□□□□ 0.153e-11■■■■■ 33.2
CAPN1-224ENST00000533129 PCBP1Q15365 356 aaKnown RBP eCLIP14.85□□□□□ -0.031e-8■■■■■ 32.7
CAPN1-224ENST00000533129 ZRANB2O95218 330 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■■■■ 32.1
CAPN1-224ENST00000533129 SF3B4Q15427 424 aaKnown RBP eCLIP14.54□□□□□ -0.081e-7■■■■■ 31.6
CAPN1-224ENST00000533129 EFTUD2Q15029 972 aaKnown RBP eCLIP15.5■□□□□ 0.072e-6■■■■■ 29.3
CAPN1-224ENST00000533129 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.038e-7■■■■□ 24.7
CAPN1-224ENST00000533129 UPF1Q92900 1129 aaKnown RBP eCLIP15.86■□□□□ 0.132e-10■■■■□ 24.6
CAPN1-224ENST00000533129 METAP2P50579 478 aaKnown RBP eCLIP16.85■□□□□ 0.293e-8■■■■□ 23.9
CAPN1-224ENST00000533129 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.27■□□□□ 0.842e-8■■■■□ 22.3
CAPN1-224ENST00000533129 GTF2F1P35269 517 aaKnown RBP eCLIP17.87■□□□□ 0.454e-13■■■■□ 21.8
CAPN1-224ENST00000533129 SF3A3Q12874 501 aaKnown RBP eCLIP15.92■□□□□ 0.148e-10■■■■□ 21.2
CAPN1-224ENST00000533129 HNRNPKP61978 463 aaKnown RBP eCLIP13.1□□□□□ -0.318e-6■■■■□ 20.7
CAPN1-224ENST00000533129 QKIQ96PU8 341 aaKnown RBP eCLIP15.11■□□□□ 0.016e-6■■■■□ 20.5
CAPN1-224ENST00000533129 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.76■□□□□ 0.277e-7■■■■□ 19.9
CAPN1-224ENST00000533129 RBFOX2O43251 390 aaKnown RBP eCLIP12.39□□□□□ -0.431e-5■■■■□ 19.7
CAPN1-224ENST00000533129 AKAP1Q92667 903 aaKnown RBP eCLIP14.03□□□□□ -0.162e-6■■■□□ 18.5
CAPN1-224ENST00000533129 PRPF4O43172 522 aaKnown RBP eCLIP15.7■□□□□ 0.12e-6■■■□□ 17.7
CAPN1-224ENST00000533129 PPIGQ13427 754 aaKnown RBP eCLIP14.25□□□□□ -0.138e-7■■■□□ 16.7
CAPN1-224ENST00000533129 FMR1Q06787 632 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■■■□□ 16.5
CAPN1-224ENST00000533129 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.14■□□□□ 0.172e-7■■■□□ 16.5
CAPN1-224ENST00000533129 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.81□□□□□ -0.682e-8■■■□□ 16
CAPN1-224ENST00000533129 G3BP1Q13283 466 aaKnown RBP eCLIP17.27■□□□□ 0.363e-6■■■□□ 16
CAPN1-224ENST00000533129 ZNF622Q969S3 477 aaKnown RBP eCLIP16.22■□□□□ 0.197e-7■■■□□ 15.2
CAPN1-224ENST00000533129 PCBP2Q15366 365 aaKnown RBP eCLIP14.44□□□□□ -0.12e-6■■■□□ 14.7
CAPN1-224ENST00000533129 PABPN1Q86U42 306 aaKnown RBP eCLIP23.9■■□□□ 1.423e-6■■■□□ 14.7
CAPN1-224ENST00000533129 FXR2P51116 673 aaKnown RBP eCLIP16.15■□□□□ 0.181e-6■■■□□ 14.6
CAPN1-224ENST00000533129 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.7■□□□□ 0.744e-6■■□□□ 13.3
CAPN1-224ENST00000533129 YBX3P16989 372 aaKnown RBP eCLIP15.55■□□□□ 0.085e-7■■□□□ 12.9
CAPN1-224ENST00000533129 PTBP1P26599 531 aaKnown RBP eCLIP14.06□□□□□ -0.164e-7■■□□□ 12.9
CAPN1-224ENST00000533129 PABPC4Q13310 644 aaKnown RBP eCLIP15.87■□□□□ 0.139e-7■■□□□ 12.4
CAPN1-224ENST00000533129 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.56■□□□□ 0.42e-6■■□□□ 11.9
CAPN1-224ENST00000533129 NCBP2P52298 156 aaKnown RBP eCLIP13.75□□□□□ -0.212e-8■□□□□ 10.4
CAPN1-224ENST00000533129 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.19■□□□□ 0.343e-6■□□□□ 10.3
CAPN1-224ENST00000533129 RPS3P23396 243 aaKnown RBP eCLIP14.28□□□□□ -0.121e-12■□□□□ 9.8
CAPN1-224ENST00000533129 LARP4Q71RC2 724 aaKnown RBP eCLIP14.82□□□□□ -0.048e-9■□□□□ 9.7
CAPN1-224ENST00000533129 MATR3P43243 847 aaKnown RBP eCLIP16.38■□□□□ 0.214e-6■□□□□ 9.5
CAPN1-224ENST00000533129 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.93■□□□□ 0.462e-6■□□□□ 9.3
CAPN1-224ENST00000533129 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.52■□□□□ 0.072e-9■□□□□ 9.2
CAPN1-224ENST00000533129 SUB1P53999 127 aaKnown RBP eCLIP11.88□□□□□ -0.511e-6■□□□□ 8.5
Retrieved 44 of 44 RNA–protein pairs in 24.8 ms