RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.4■■■□□ 2.143e-21■■■■■ 61.8
CPSF1-202ENST00000527827 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.84■■□□□ 1.572e-8■■■■■ 57.8
CPSF1-202ENST00000527827 SF3B1O75533 1304 aaKnown RBP eCLIP26.1■■□□□ 1.777e-8■■■■■ 37.5
CPSF1-202ENST00000527827 EFTUD2Q15029 972 aaKnown RBP eCLIP21.8■■□□□ 1.086e-12■■■■■ 29.9
CPSF1-202ENST00000527827 PRPF4O43172 522 aaKnown RBP eCLIP22.37■■□□□ 1.171e-7■■■■■ 28.5
CPSF1-202ENST00000527827 CDC40O60508 579 aaKnown RBP eCLIP21.99■■□□□ 1.112e-9■■■■□ 25.1
CPSF1-202ENST00000527827 TROVE2P10155 538 aaKnown RBP eCLIP19.55■□□□□ 0.728e-9■■■■□ 22.1
CPSF1-202ENST00000527827 ZNF622Q969S3 477 aaKnown RBP eCLIP31.64■■■□□ 2.663e-13■■■■□ 20.2
CPSF1-202ENST00000527827 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.04■■■□□ 2.086e-18■■■□□ 16.7
CPSF1-202ENST00000527827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.42■■■■□ 3.589e-7■■■□□ 16.5
CPSF1-202ENST00000527827 PTBP1P26599 531 aaKnown RBP eCLIP17.47■□□□□ 0.395e-6■■■□□ 16.4
CPSF1-202ENST00000527827 NCBP2P52298 156 aaKnown RBP eCLIP21.15■□□□□ 0.985e-6■■■□□ 15.2
CPSF1-202ENST00000527827 FXR2P51116 673 aaKnown RBP eCLIP25.89■■□□□ 1.741e-8■■■□□ 15.1
CPSF1-202ENST00000527827 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.7■□□□□ 0.95e-15■■■□□ 15.1
CPSF1-202ENST00000527827 SMNDC1O75940 238 aaKnown RBP eCLIP21.3■■□□□ 19e-12■■□□□ 12.5
CPSF1-202ENST00000527827 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.12■■□□□ 1.771e-8■■□□□ 12.4
CPSF1-202ENST00000527827 SF3B4Q15427 424 aaKnown RBP eCLIP21.54■■□□□ 1.045e-9■■□□□ 12.4
CPSF1-202ENST00000527827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.65■■■□□ 2.822e-6■■□□□ 11.9
CPSF1-202ENST00000527827 PPIGQ13427 754 aaKnown RBP eCLIP27.99■■■□□ 2.072e-13■■□□□ 11.9
CPSF1-202ENST00000527827 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.98■■□□□ 1.273e-11■□□□□ 11.3
CPSF1-202ENST00000527827 AQRO60306 1485 aaKnown RBP eCLIP43.51■■■■■ 4.561e-9■□□□□ 10.3
CPSF1-202ENST00000527827 RBM5P52756 815 aaKnown RBP eCLIP29.85■■■□□ 2.372e-6■□□□□ 10.3
CPSF1-202ENST00000527827 WDR43Q15061 677 aaKnown RBP eCLIP30.71■■■□□ 2.519e-14■□□□□ 10.2
CPSF1-202ENST00000527827 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.88■□□□□ 0.613e-9■□□□□ 10.2
CPSF1-202ENST00000527827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.98■■■■□ 3.512e-7■□□□□ 10.2
CPSF1-202ENST00000527827 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.95■■■□□ 2.224e-7■□□□□ 9.8
CPSF1-202ENST00000527827 RBFOX2O43251 390 aaKnown RBP eCLIP17.45■□□□□ 0.384e-15■□□□□ 9.7
CPSF1-202ENST00000527827 FMR1Q06787 632 aaKnown RBP eCLIP30.93■■■□□ 2.544e-10■□□□□ 9.7
CPSF1-202ENST00000527827 RBM22Q9NW64 420 aaKnown RBP eCLIP23.34■■□□□ 1.331e-7■□□□□ 9.5
CPSF1-202ENST00000527827 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.09■■□□□ 1.453e-6■□□□□ 9.1
CPSF1-202ENST00000527827 MTPAPQ9NVV4 582 aaKnown RBP eCLIP24.85■■□□□ 1.577e-8■□□□□ 8.9
CPSF1-202ENST00000527827 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.67■■■□□ 2.342e-11■□□□□ 8.5
CPSF1-202ENST00000527827 LARP4Q71RC2 724 aaKnown RBP eCLIP21.29■■□□□ 12e-8■□□□□ 8.4
CPSF1-202ENST00000527827 LSM11P83369 360 aaKnown RBP eCLIP20.63■□□□□ 0.895e-10■□□□□ 8.3
CPSF1-202ENST00000527827 NIPBLQ6KC79 2804 aaeCLIP21.76■■□□□ 1.075e-8■□□□□ 8.3
CPSF1-202ENST00000527827 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.54■□□□□ 0.881e-8■□□□□ 8.1
CPSF1-202ENST00000527827 METAP2P50579 478 aaKnown RBP eCLIP26.71■■□□□ 1.879e-6■□□□□ 8.1
Retrieved 37 of 37 RNA–protein pairs in 23.8 ms