RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.73□□□□□ -2.134e-98■■■■■ 943.1
SMC4-227ENST00000497984 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.78□□□□□ -12e-129■■■■■ 884.5
SMC4-227ENST00000497984 PABPC4Q13310 644 aaKnown RBP eCLIP5.85□□□□□ -1.478e-9■■■■■ 603.5
SMC4-227ENST00000497984 RPS11P62280 158 aaKnown RBP eCLIP1.43□□□□□ -2.188e-17■■■■■ 578.9
SMC4-227ENST00000497984 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.64□□□□□ -1.832e-144■■■■■ 553.7
SMC4-227ENST00000497984 DDX3XO00571 662 aaKnown RBP eCLIP6.69□□□□□ -1.344e-78■■■■■ 527.9
SMC4-227ENST00000497984 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.96□□□□□ -0.651e-6■■■■■ 406.9
SMC4-227ENST00000497984 YWHAGP61981 247 aaKnown RBP eCLIP1.47□□□□□ -2.171e-117■■■■■ 400.8
SMC4-227ENST00000497984 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.75□□□□□ -1.815e-13■■■■■ 348.1
SMC4-227ENST00000497984 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.07□□□□□ -1.761e-147■■■■■ 345.5
SMC4-227ENST00000497984 RPS3P23396 243 aaKnown RBP eCLIP-0.16□□□□□ -2.447e-64■■■■■ 337.8
SMC4-227ENST00000497984 SF3B1O75533 1304 aaKnown RBP eCLIP1.84□□□□□ -2.127e-33■■■■■ 320.9
SMC4-227ENST00000497984 AGGF1Q8N302 714 aaeCLIP8.59□□□□□ -1.032e-85■■■■■ 286.7
SMC4-227ENST00000497984 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.58□□□□□ -2.325e-47■■■■■ 274.1
SMC4-227ENST00000497984 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.03□□□□□ -2.241e-8■■■■■ 268.2
SMC4-227ENST00000497984 AARSP49588 968 aaKnown RBP eCLIP3.74□□□□□ -1.813e-49■■■■■ 252.4
SMC4-227ENST00000497984 LSM11P83369 360 aaKnown RBP eCLIP12.58□□□□□ -0.47e-97■■■■■ 245.7
SMC4-227ENST00000497984 QKIQ96PU8 341 aaKnown RBP eCLIP0.93□□□□□ -2.267e-7■■■■■ 232.7
SMC4-227ENST00000497984 RBM15Q96T37 977 aaKnown RBP eCLIP6.81□□□□□ -1.325e-67■■■■■ 212.6
SMC4-227ENST00000497984 SF3A3Q12874 501 aaKnown RBP eCLIP4.14□□□□□ -1.754e-10■■■■■ 210.9
SMC4-227ENST00000497984 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.03□□□□□ -0.82e-41■■■■■ 207.1
SMC4-227ENST00000497984 DDX21Q9NR30 783 aaKnown RBP eCLIP4.3□□□□□ -1.721e-26■■■■■ 198.7
SMC4-227ENST00000497984 AQRO60306 1485 aaKnown RBP eCLIP0.87□□□□□ -2.272e-51■■■■■ 196.9
SMC4-227ENST00000497984 GTF2F1P35269 517 aaKnown RBP eCLIP6.05□□□□□ -1.448e-49■■■■■ 172.1
SMC4-227ENST00000497984 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.5□□□□□ -1.372e-9■■■■■ 161.6
SMC4-227ENST00000497984 NCBP2P52298 156 aaKnown RBP eCLIP1.68□□□□□ -2.146e-34■■■■■ 154.9
SMC4-227ENST00000497984 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.8□□□□□ -1.646e-65■■■■■ 143.5
SMC4-227ENST00000497984 NONOQ15233 471 aaKnown RBP eCLIP2.79□□□□□ -1.962e-56■■■■■ 142.8
SMC4-227ENST00000497984 AKAP1Q92667 903 aaKnown RBP eCLIP4.54□□□□□ -1.684e-24■■■■■ 140.6
SMC4-227ENST00000497984 G3BP1Q13283 466 aaKnown RBP eCLIP3.29□□□□□ -1.881e-39■■■■■ 140
SMC4-227ENST00000497984 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.52□□□□□ -1.857e-44■■■■■ 137.4
SMC4-227ENST00000497984 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.69□□□□□ -1.54e-34■■■■■ 131.8
SMC4-227ENST00000497984 HLTFQ14527 1009 aaKnown RBP eCLIP4.21□□□□□ -1.745e-35■■■■■ 127.1
SMC4-227ENST00000497984 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.58□□□□□ -1.524e-9■■■■■ 118.1
SMC4-227ENST00000497984 AATFQ9NY61 560 aaKnown RBP eCLIP1.88□□□□□ -2.114e-8■■■■■ 116
SMC4-227ENST00000497984 ZC3H11AO75152 810 aaKnown RBP eCLIP4.55□□□□□ -1.684e-12■■■■■ 110
SMC4-227ENST00000497984 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.37□□□□□ -2.471e-8■■■■■ 101.8
SMC4-227ENST00000497984 WDR43Q15061 677 aaKnown RBP eCLIP0.83□□□□□ -2.285e-20■■■■■ 85.2
SMC4-227ENST00000497984 NIP7Q9Y221 180 aaKnown RBP eCLIP2.59□□□□□ -1.991e-7■■■■■ 83.2
SMC4-227ENST00000497984 PPIGQ13427 754 aaKnown RBP eCLIP3.76□□□□□ -1.812e-27■■■■■ 81.9
SMC4-227ENST00000497984 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.05□□□□□ -2.083e-18■■■■■ 78.4
SMC4-227ENST00000497984 FXR2P51116 673 aaKnown RBP eCLIP15.82■□□□□ 0.128e-21■■■■■ 76.4
SMC4-227ENST00000497984 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.26□□□□□ -2.213e-9■■■■■ 74.3
SMC4-227ENST00000497984 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.33□□□□□ -1.724e-23■■■■■ 72.8
SMC4-227ENST00000497984 HNRNPUQ00839 825 aaKnown RBP eCLIP7.92□□□□□ -1.142e-22■■■■■ 68.1
SMC4-227ENST00000497984 SMNDC1O75940 238 aaKnown RBP eCLIP8.55□□□□□ -1.042e-16■■■■■ 67.6
SMC4-227ENST00000497984 RBM22Q9NW64 420 aaKnown RBP eCLIP0.98□□□□□ -2.255e-24■■■■■ 66.5
SMC4-227ENST00000497984 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.65□□□□□ -1.991e-13■■■■■ 65.9
SMC4-227ENST00000497984 TROVE2P10155 538 aaKnown RBP eCLIP1.28□□□□□ -2.21e-12■■■■■ 61.2
SMC4-227ENST00000497984 EIF3GO75821 320 aaKnown RBP eCLIP1.6□□□□□ -2.158e-13■■■■■ 59.2
SMC4-227ENST00000497984 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.61□□□□□ -2.152e-13■■■■■ 56.3
SMC4-227ENST00000497984 EIF3DO15371 548 aaKnown RBP eCLIP3.53□□□□□ -1.842e-16■■■■■ 56.2
SMC4-227ENST00000497984 SSBP05455 408 aaKnown RBP eCLIP6.56□□□□□ -1.369e-17■■■■■ 55.5
SMC4-227ENST00000497984 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.42□□□□□ -1.382e-6■■■■■ 54.3
SMC4-227ENST00000497984 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.22□□□□□ -1.571e-8■■■■■ 54.3
SMC4-227ENST00000497984 RBFOX2O43251 390 aaKnown RBP eCLIP1.67□□□□□ -2.143e-8■■■■■ 54.1
SMC4-227ENST00000497984 GRSF1Q12849 480 aaKnown RBP eCLIP4.21□□□□□ -1.742e-14■■■■■ 48.8
SMC4-227ENST00000497984 HNRNPLP14866 589 aaKnown RBP eCLIP5.98□□□□□ -1.452e-15■■■■■ 47.4
SMC4-227ENST00000497984 U2AF1Q01081 240 aaKnown RBP eCLIP4.51□□□□□ -1.695e-12■■■■■ 47.2
SMC4-227ENST00000497984 NIPBLQ6KC79 2804 aaeCLIP-0.13□□□□□ -2.438e-8■■■■■ 47
SMC4-227ENST00000497984 HNRNPKP61978 463 aaKnown RBP eCLIP2.92□□□□□ -1.945e-13■■■■■ 46
SMC4-227ENST00000497984 KHSRPQ92945 711 aaKnown RBP eCLIP12.85□□□□□ -0.353e-15■■■■■ 43.1
SMC4-227ENST00000497984 U2AF2P26368 475 aaKnown RBP eCLIP1.37□□□□□ -2.197e-7■■■■■ 42.7
SMC4-227ENST00000497984 ILF3Q12906 894 aaKnown RBP eCLIP4.2□□□□□ -1.748e-14■■■■■ 40.3
SMC4-227ENST00000497984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.61□□□□□ -0.231e-7■■■■■ 39.2
SMC4-227ENST00000497984 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.28□□□□□ -1.247e-12■■■■■ 38.5
SMC4-227ENST00000497984 PCBP1Q15365 356 aaKnown RBP eCLIP5.75□□□□□ -1.497e-12■■■■■ 38.2
SMC4-227ENST00000497984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.512e-7■■■■■ 35.7
SMC4-227ENST00000497984 SND1Q7KZF4 910 aaKnown RBP eCLIP7.45□□□□□ -1.226e-9■■■■■ 32.8
SMC4-227ENST00000497984 NOLC1Q14978 699 aaKnown RBP eCLIP6.33□□□□□ -1.44e-16■■■■■ 30.2
SMC4-227ENST00000497984 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.75□□□□□ -1.172e-7■■■■□ 26.2
SMC4-227ENST00000497984 UPF1Q92900 1129 aaKnown RBP eCLIP12.49□□□□□ -0.411e-11■■■■□ 26.2
SMC4-227ENST00000497984 SF3B4Q15427 424 aaKnown RBP eCLIP4.11□□□□□ -1.753e-8■■■■□ 26.1
SMC4-227ENST00000497984 TAF15Q92804 592 aaKnown RBP eCLIP4.08□□□□□ -1.767e-26■■■■□ 25.9
SMC4-227ENST00000497984 LARP4Q71RC2 724 aaKnown RBP eCLIP6.31□□□□□ -1.44e-12■■■■□ 24.2
SMC4-227ENST00000497984 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.85□□□□□ -1.475e-7■■■■□ 23.7
SMC4-227ENST00000497984 TIA1P31483 386 aaKnown RBP eCLIP2.67□□□□□ -1.985e-7■■■■□ 23.6
SMC4-227ENST00000497984 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.89□□□□□ -2.558e-10■■■■□ 19.5
SMC4-227ENST00000497984 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.07□□□□□ -1.923e-11■■■□□ 18.8
SMC4-227ENST00000497984 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.73□□□□□ -1.817e-7■■□□□ 12.7
SMC4-227ENST00000497984 ZNF622Q969S3 477 aaKnown RBP eCLIP3.02□□□□□ -1.932e-7■■□□□ 11.8
SMC4-227ENST00000497984 EFTUD2Q15029 972 aaKnown RBP eCLIP2.93□□□□□ -1.947e-8■■□□□ 11.8
SMC4-227ENST00000497984 FMR1Q06787 632 aaKnown RBP eCLIP7.81□□□□□ -1.165e-7■□□□□ 11.2
SMC4-227ENST00000497984 GPKOWQ92917 476 aaPredicted RBP eCLIP10.24□□□□□ -0.774e-13■□□□□ 10.3
Retrieved 84 of 84 RNA–protein pairs in 207.4 ms