RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.57■■□□□ 1.361e-147■■■■■ 345.5
SMC4-221ENST00000489573 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.52■■□□□ 1.682e-144■■■■■ 553.7
SMC4-221ENST00000489573 YWHAGP61981 247 aaKnown RBP eCLIP22.59■■□□□ 1.211e-117■■■■■ 400.8
SMC4-221ENST00000489573 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.78■□□□□ 0.924e-98■■■■■ 943.1
SMC4-221ENST00000489573 LSM11P83369 360 aaKnown RBP eCLIP19.78■□□□□ 0.767e-97■■■■■ 245.7
SMC4-221ENST00000489573 AGGF1Q8N302 714 aaeCLIP21.99■■□□□ 1.112e-85■■■■■ 286.7
SMC4-221ENST00000489573 DDX3XO00571 662 aaKnown RBP eCLIP23.19■■□□□ 1.34e-78■■■■■ 527.9
SMC4-221ENST00000489573 RBM15Q96T37 977 aaKnown RBP eCLIP22.11■■□□□ 1.135e-67■■■■■ 212.6
SMC4-221ENST00000489573 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.21■■■□□ 2.276e-65■■■■■ 143.5
SMC4-221ENST00000489573 RPS3P23396 243 aaKnown RBP eCLIP21.48■■□□□ 1.037e-64■■■■■ 337.8
SMC4-221ENST00000489573 AARSP49588 968 aaKnown RBP eCLIP23.03■■□□□ 1.283e-49■■■■■ 252.4
SMC4-221ENST00000489573 GTF2F1P35269 517 aaKnown RBP eCLIP22.69■■□□□ 1.228e-49■■■■■ 172.1
SMC4-221ENST00000489573 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.72■■□□□ 1.235e-47■■■■■ 274.1
SMC4-221ENST00000489573 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.64■■□□□ 1.227e-44■■■■■ 137.4
SMC4-221ENST00000489573 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.57■□□□□ 0.722e-41■■■■■ 207.1
SMC4-221ENST00000489573 G3BP1Q13283 466 aaKnown RBP eCLIP26.75■■□□□ 1.871e-39■■■■■ 140
SMC4-221ENST00000489573 HLTFQ14527 1009 aaKnown RBP eCLIP22.32■■□□□ 1.165e-35■■■■■ 127.1
SMC4-221ENST00000489573 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.22■■□□□ 1.634e-34■■■■■ 131.8
SMC4-221ENST00000489573 SF3B1O75533 1304 aaKnown RBP eCLIP22.86■■□□□ 1.257e-33■■■■■ 320.9
SMC4-221ENST00000489573 PPIGQ13427 754 aaKnown RBP eCLIP22.9■■□□□ 1.262e-27■■■■■ 81.9
SMC4-221ENST00000489573 DDX21Q9NR30 783 aaKnown RBP eCLIP27.46■■□□□ 1.991e-26■■■■■ 198.7
SMC4-221ENST00000489573 TAF15Q92804 592 aaKnown RBP eCLIP17.11■□□□□ 0.337e-26■■■■□ 25.9
SMC4-221ENST00000489573 AKAP1Q92667 903 aaKnown RBP eCLIP18.76■□□□□ 0.594e-24■■■■■ 140.6
SMC4-221ENST00000489573 RBM22Q9NW64 420 aaKnown RBP eCLIP22.1■■□□□ 1.135e-24■■■■■ 66.5
SMC4-221ENST00000489573 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.98■■□□□ 1.274e-23■■■■■ 72.8
SMC4-221ENST00000489573 HNRNPUQ00839 825 aaKnown RBP eCLIP29.02■■■□□ 2.242e-22■■■■■ 68.1
SMC4-221ENST00000489573 WDR43Q15061 677 aaKnown RBP eCLIP28.99■■■□□ 2.235e-20■■■■■ 85.2
SMC4-221ENST00000489573 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.68■■□□□ 1.223e-18■■■■■ 78.4
SMC4-221ENST00000489573 NCBP2P52298 156 aaKnown RBP eCLIP20.42■□□□□ 0.862e-17■■■■■ 76.5
SMC4-221ENST00000489573 RPS11P62280 158 aaKnown RBP eCLIP18.98■□□□□ 0.638e-17■■■■■ 578.9
SMC4-221ENST00000489573 SSBP05455 408 aaKnown RBP eCLIP24.18■■□□□ 1.469e-17■■■■■ 55.5
SMC4-221ENST00000489573 EIF3DO15371 548 aaKnown RBP eCLIP23.91■■□□□ 1.422e-16■■■■■ 56.2
SMC4-221ENST00000489573 SMNDC1O75940 238 aaKnown RBP eCLIP19.6■□□□□ 0.732e-16■■■■■ 67.6
SMC4-221ENST00000489573 NOLC1Q14978 699 aaKnown RBP eCLIP23.55■■□□□ 1.364e-16■■■■■ 30.2
SMC4-221ENST00000489573 HNRNPLP14866 589 aaKnown RBP eCLIP21.67■■□□□ 1.062e-15■■■■■ 47.4
SMC4-221ENST00000489573 KHSRPQ92945 711 aaKnown RBP eCLIP22.73■■□□□ 1.233e-15■■■■■ 43.1
SMC4-221ENST00000489573 GRSF1Q12849 480 aaKnown RBP eCLIP21.61■■□□□ 1.052e-14■■■■■ 48.8
SMC4-221ENST00000489573 ILF3Q12906 894 aaKnown RBP eCLIP21.02■□□□□ 0.968e-14■■■■■ 40.3
SMC4-221ENST00000489573 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.37■□□□□ 0.851e-13■■■■■ 65.9
SMC4-221ENST00000489573 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.58■■□□□ 1.052e-13■■■■■ 56.3
SMC4-221ENST00000489573 GPKOWQ92917 476 aaPredicted RBP eCLIP24.95■■□□□ 1.583e-13■□□□□ 9.7
SMC4-221ENST00000489573 HNRNPKP61978 463 aaKnown RBP eCLIP20.9■□□□□ 0.945e-13■■■■■ 46
SMC4-221ENST00000489573 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.8■□□□□ 0.925e-13■■■■■ 220.5
SMC4-221ENST00000489573 EIF3GO75821 320 aaKnown RBP eCLIP16.83■□□□□ 0.288e-13■■■■■ 59.2
SMC4-221ENST00000489573 TROVE2P10155 538 aaKnown RBP eCLIP21.24■□□□□ 0.991e-12■■■■■ 61.2
SMC4-221ENST00000489573 PCBP1Q15365 356 aaKnown RBP eCLIP23.52■■□□□ 1.363e-12■■■■□ 20.8
SMC4-221ENST00000489573 LARP4Q71RC2 724 aaKnown RBP eCLIP20.95■□□□□ 0.944e-12■■■■□ 24.2
SMC4-221ENST00000489573 ZC3H11AO75152 810 aaKnown RBP eCLIP23.39■■□□□ 1.334e-12■■■■■ 110
SMC4-221ENST00000489573 U2AF1Q01081 240 aaKnown RBP eCLIP28.75■■■□□ 2.195e-12■■■■■ 47.2
SMC4-221ENST00000489573 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.53■□□□□ 0.727e-12■■■■■ 38.5
SMC4-221ENST00000489573 UPF1Q92900 1129 aaKnown RBP eCLIP27.01■■□□□ 1.921e-11■■■■□ 26.2
SMC4-221ENST00000489573 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.65■■□□□ 1.383e-11■■■□□ 18.8
SMC4-221ENST00000489573 FXR2P51116 673 aaKnown RBP eCLIP24.48■■□□□ 1.512e-10■■■■■ 37.2
SMC4-221ENST00000489573 SF3A3Q12874 501 aaKnown RBP eCLIP21.23■□□□□ 0.994e-10■■■■■ 210.9
SMC4-221ENST00000489573 HNRNPMP52272 730 aaKnown RBP eCLIP32.25■■■□□ 2.752e-9■□□□□ 8.7
SMC4-221ENST00000489573 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.79■■□□□ 1.242e-9■■■■■ 123.9
SMC4-221ENST00000489573 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.83■■■□□ 2.853e-9■■■■■ 72.1
SMC4-221ENST00000489573 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.34■□□□□ 0.373e-9■■■■■ 52.5
SMC4-221ENST00000489573 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.02■□□□□ 0.84e-9■■■■■ 118.1
SMC4-221ENST00000489573 SND1Q7KZF4 910 aaKnown RBP eCLIP22.53■■□□□ 1.26e-9■■■■■ 32.8
SMC4-221ENST00000489573 PABPC4Q13310 644 aaKnown RBP eCLIP24.58■■□□□ 1.528e-9■■■■■ 603.5
SMC4-221ENST00000489573 AQRO60306 1485 aaKnown RBP eCLIP34.92■■■■□ 3.181e-8■■■■■ 109.5
SMC4-221ENST00000489573 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.69■■□□□ 1.381e-8■■■■■ 54.3
SMC4-221ENST00000489573 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.31■■□□□ 1.161e-8■■■■■ 268.2
SMC4-221ENST00000489573 NONOQ15233 471 aaKnown RBP eCLIP24.75■■□□□ 1.552e-8■■■■■ 98.1
SMC4-221ENST00000489573 EFTUD2Q15029 972 aaKnown RBP eCLIP21.87■■□□□ 1.092e-8■■□□□ 12.6
SMC4-221ENST00000489573 RBFOX2O43251 390 aaKnown RBP eCLIP17.62■□□□□ 0.413e-8■■■■■ 54.1
SMC4-221ENST00000489573 AATFQ9NY61 560 aaKnown RBP eCLIP25.78■■□□□ 1.724e-8■■■■■ 116
SMC4-221ENST00000489573 SF3B4Q15427 424 aaKnown RBP eCLIP19.1■□□□□ 0.655e-8■■■■□ 22.8
SMC4-221ENST00000489573 MATR3P43243 847 aaKnown RBP eCLIP23.6■■□□□ 1.377e-8■■□□□ 11.8
SMC4-221ENST00000489573 NIPBLQ6KC79 2804 aaeCLIP16.65■□□□□ 0.268e-8■■■■■ 47
SMC4-221ENST00000489573 SRSF1Q07955 248 aaKnown RBP eCLIP18.19■□□□□ 0.59e-8■■□□□ 13.7
SMC4-221ENST00000489573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.06■■■□□ 2.081e-7■■■■■ 35.1
SMC4-221ENST00000489573 NIP7Q9Y221 180 aaKnown RBP eCLIP26.83■■□□□ 1.891e-7■■■■■ 83.2
SMC4-221ENST00000489573 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.66■■■□□ 2.821e-7■■■□□ 17.3
SMC4-221ENST00000489573 ZNF622Q969S3 477 aaKnown RBP eCLIP26.15■■□□□ 1.782e-7■■□□□ 13.9
SMC4-221ENST00000489573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.52■■■□□ 2.642e-7■■■■■ 32.9
SMC4-221ENST00000489573 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.52■■□□□ 1.22e-7■■■■□ 26.2
SMC4-221ENST00000489573 TIA1P31483 386 aaKnown RBP eCLIP20.72■□□□□ 0.912e-7■■■□□ 18.7
SMC4-221ENST00000489573 FMR1Q06787 632 aaKnown RBP eCLIP24.71■■□□□ 1.553e-7■□□□□ 10
SMC4-221ENST00000489573 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.01■■□□□ 1.275e-7■■■■□ 23.7
SMC4-221ENST00000489573 U2AF2P26368 475 aaKnown RBP eCLIP24.96■■□□□ 1.596e-7■■■■■ 34.1
SMC4-221ENST00000489573 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.24■■□□□ 1.317e-7■■□□□ 12.7
SMC4-221ENST00000489573 QKIQ96PU8 341 aaKnown RBP eCLIP22.31■■□□□ 1.167e-7■■■■■ 232.7
SMC4-221ENST00000489573 TRA2AQ13595 282 aaKnown RBP eCLIP20.4■□□□□ 0.861e-6■■■□□ 18.2
SMC4-221ENST00000489573 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.41■■□□□ 1.51e-6■■■■■ 406.9
SMC4-221ENST00000489573 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.63■□□□□ 0.892e-6■■■■■ 54.3
SMC4-221ENST00000489573 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.35■■□□□ 1.332e-6■■■■■ 539.2
Retrieved 88 of 88 RNA–protein pairs in 41.9 ms