RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.16□□□□□ -2.224e-98■■■■■ 943.1
SMC4-219ENST00000487747 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.22□□□□□ -0.932e-129■■■■■ 884.5
SMC4-219ENST00000487747 PABPC4Q13310 644 aaKnown RBP eCLIP6.38□□□□□ -1.398e-9■■■■■ 603.5
SMC4-219ENST00000487747 RPS11P62280 158 aaKnown RBP eCLIP1.23□□□□□ -2.218e-17■■■■■ 578.9
SMC4-219ENST00000487747 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.05□□□□□ -1.762e-144■■■■■ 553.7
SMC4-219ENST00000487747 DDX3XO00571 662 aaKnown RBP eCLIP7.07□□□□□ -1.284e-78■■■■■ 527.9
SMC4-219ENST00000487747 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.61□□□□□ -0.551e-6■■■■■ 406.9
SMC4-219ENST00000487747 YWHAGP61981 247 aaKnown RBP eCLIP0.98□□□□□ -2.251e-117■■■■■ 400.8
SMC4-219ENST00000487747 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.49□□□□□ -1.691e-147■■■■■ 345.5
SMC4-219ENST00000487747 RPS3P23396 243 aaKnown RBP eCLIP-0.04□□□□□ -2.427e-64■■■■■ 337.8
SMC4-219ENST00000487747 SF3B1O75533 1304 aaKnown RBP eCLIP1.27□□□□□ -2.217e-33■■■■■ 320.9
SMC4-219ENST00000487747 AGGF1Q8N302 714 aaeCLIP8.99□□□□□ -0.972e-85■■■■■ 286.7
SMC4-219ENST00000487747 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.26□□□□□ -2.375e-47■■■■■ 274.1
SMC4-219ENST00000487747 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.63□□□□□ -2.311e-8■■■■■ 268.2
SMC4-219ENST00000487747 AARSP49588 968 aaKnown RBP eCLIP4.21□□□□□ -1.743e-49■■■■■ 252.4
SMC4-219ENST00000487747 LSM11P83369 360 aaKnown RBP eCLIP12.91□□□□□ -0.347e-97■■■■■ 245.7
SMC4-219ENST00000487747 QKIQ96PU8 341 aaKnown RBP eCLIP0.6□□□□□ -2.317e-7■■■■■ 232.7
SMC4-219ENST00000487747 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.11□□□□□ -1.755e-13■■■■■ 220.5
SMC4-219ENST00000487747 RBM15Q96T37 977 aaKnown RBP eCLIP7.09□□□□□ -1.275e-67■■■■■ 212.6
SMC4-219ENST00000487747 SF3A3Q12874 501 aaKnown RBP eCLIP4.61□□□□□ -1.674e-10■■■■■ 210.9
SMC4-219ENST00000487747 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.36□□□□□ -0.752e-41■■■■■ 207.1
SMC4-219ENST00000487747 DDX21Q9NR30 783 aaKnown RBP eCLIP4.82□□□□□ -1.641e-26■■■■■ 198.7
SMC4-219ENST00000487747 GTF2F1P35269 517 aaKnown RBP eCLIP6.68□□□□□ -1.348e-49■■■■■ 172.1
SMC4-219ENST00000487747 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.08□□□□□ -1.289e-7■■■■■ 161.6
SMC4-219ENST00000487747 NCBP2P52298 156 aaKnown RBP eCLIP1.41□□□□□ -2.186e-34■■■■■ 154.9
SMC4-219ENST00000487747 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.16□□□□□ -1.586e-65■■■■■ 143.5
SMC4-219ENST00000487747 NONOQ15233 471 aaKnown RBP eCLIP3.02□□□□□ -1.932e-56■■■■■ 142.8
SMC4-219ENST00000487747 AKAP1Q92667 903 aaKnown RBP eCLIP4.95□□□□□ -1.624e-24■■■■■ 140.6
SMC4-219ENST00000487747 G3BP1Q13283 466 aaKnown RBP eCLIP3.39□□□□□ -1.871e-39■■■■■ 140
SMC4-219ENST00000487747 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.79□□□□□ -1.87e-44■■■■■ 137.4
SMC4-219ENST00000487747 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.2□□□□□ -1.424e-34■■■■■ 131.8
SMC4-219ENST00000487747 HLTFQ14527 1009 aaKnown RBP eCLIP4.43□□□□□ -1.75e-35■■■■■ 127.1
SMC4-219ENST00000487747 AQRO60306 1485 aaKnown RBP eCLIP0.55□□□□□ -2.325e-13■■■■■ 125.3
SMC4-219ENST00000487747 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.05□□□□□ -1.444e-9■■■■■ 118.1
SMC4-219ENST00000487747 AATFQ9NY61 560 aaKnown RBP eCLIP1.51□□□□□ -2.174e-8■■■■■ 116
SMC4-219ENST00000487747 ZC3H11AO75152 810 aaKnown RBP eCLIP4.89□□□□□ -1.634e-12■■■■■ 110
SMC4-219ENST00000487747 WDR43Q15061 677 aaKnown RBP eCLIP0.52□□□□□ -2.335e-20■■■■■ 85.2
SMC4-219ENST00000487747 NIP7Q9Y221 180 aaKnown RBP eCLIP2.81□□□□□ -1.961e-7■■■■■ 83.2
SMC4-219ENST00000487747 PPIGQ13427 754 aaKnown RBP eCLIP4.01□□□□□ -1.772e-27■■■■■ 81.9
SMC4-219ENST00000487747 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.1□□□□□ -2.437e-9■■■■■ 81.8
SMC4-219ENST00000487747 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.39□□□□□ -2.193e-18■■■■■ 78.4
SMC4-219ENST00000487747 FXR2P51116 673 aaKnown RBP eCLIP16.15■□□□□ 0.188e-21■■■■■ 76.4
SMC4-219ENST00000487747 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP0.83□□□□□ -2.283e-9■■■■■ 74.3
SMC4-219ENST00000487747 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.67□□□□□ -1.664e-23■■■■■ 72.8
SMC4-219ENST00000487747 HNRNPUQ00839 825 aaKnown RBP eCLIP8.24□□□□□ -1.092e-22■■■■■ 68.1
SMC4-219ENST00000487747 SMNDC1O75940 238 aaKnown RBP eCLIP8.95□□□□□ -0.982e-16■■■■■ 67.6
SMC4-219ENST00000487747 RBFOX2O43251 390 aaKnown RBP eCLIP1.5□□□□□ -2.173e-28■■■■■ 67
SMC4-219ENST00000487747 RBM22Q9NW64 420 aaKnown RBP eCLIP0.64□□□□□ -2.315e-24■■■■■ 66.5
SMC4-219ENST00000487747 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.74□□□□□ -1.971e-13■■■■■ 65.9
SMC4-219ENST00000487747 TROVE2P10155 538 aaKnown RBP eCLIP0.84□□□□□ -2.271e-12■■■■■ 61.2
SMC4-219ENST00000487747 EIF3GO75821 320 aaKnown RBP eCLIP1.07□□□□□ -2.248e-13■■■■■ 59.2
SMC4-219ENST00000487747 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.1□□□□□ -2.232e-13■■■■■ 56.3
SMC4-219ENST00000487747 EIF3DO15371 548 aaKnown RBP eCLIP3.91□□□□□ -1.782e-16■■■■■ 56.2
SMC4-219ENST00000487747 SSBP05455 408 aaKnown RBP eCLIP7.11□□□□□ -1.279e-17■■■■■ 55.5
SMC4-219ENST00000487747 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.85□□□□□ -1.312e-6■■■■■ 54.3
SMC4-219ENST00000487747 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.55□□□□□ -1.521e-8■■■■■ 54.3
SMC4-219ENST00000487747 U2AF2P26368 475 aaKnown RBP eCLIP0.92□□□□□ -2.268e-7■■■■■ 49.4
SMC4-219ENST00000487747 GRSF1Q12849 480 aaKnown RBP eCLIP4.6□□□□□ -1.672e-14■■■■■ 48.8
SMC4-219ENST00000487747 HNRNPLP14866 589 aaKnown RBP eCLIP6.43□□□□□ -1.382e-15■■■■■ 47.4
SMC4-219ENST00000487747 U2AF1Q01081 240 aaKnown RBP eCLIP4.98□□□□□ -1.615e-12■■■■■ 47.2
SMC4-219ENST00000487747 NIPBLQ6KC79 2804 aaeCLIP-0.15□□□□□ -2.438e-8■■■■■ 47
SMC4-219ENST00000487747 HNRNPKP61978 463 aaKnown RBP eCLIP3.2□□□□□ -1.95e-13■■■■■ 46
SMC4-219ENST00000487747 KHSRPQ92945 711 aaKnown RBP eCLIP13.33□□□□□ -0.283e-15■■■■■ 43.1
SMC4-219ENST00000487747 ILF3Q12906 894 aaKnown RBP eCLIP4.5□□□□□ -1.698e-14■■■■■ 40.3
SMC4-219ENST00000487747 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.69□□□□□ -1.187e-12■■■■■ 38.5
SMC4-219ENST00000487747 PCBP1Q15365 356 aaKnown RBP eCLIP6.31□□□□□ -1.47e-12■■■■■ 38.2
SMC4-219ENST00000487747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.75■□□□□ 0.592e-7■■■■■ 35.7
SMC4-219ENST00000487747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.07□□□□□ -0.165e-7■■■■■ 34.9
SMC4-219ENST00000487747 SND1Q7KZF4 910 aaKnown RBP eCLIP8.05□□□□□ -1.126e-9■■■■■ 32.8
SMC4-219ENST00000487747 NOLC1Q14978 699 aaKnown RBP eCLIP6.77□□□□□ -1.334e-16■■■■■ 30.2
SMC4-219ENST00000487747 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.06□□□□□ -1.122e-7■■■■□ 26.2
SMC4-219ENST00000487747 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.331e-11■■■■□ 26.2
SMC4-219ENST00000487747 TAF15Q92804 592 aaKnown RBP eCLIP4.26□□□□□ -1.737e-26■■■■□ 25.9
SMC4-219ENST00000487747 LARP4Q71RC2 724 aaKnown RBP eCLIP6.72□□□□□ -1.331e-17■■■■□ 24.2
SMC4-219ENST00000487747 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.04□□□□□ -1.286e-8■■■■□ 23.9
SMC4-219ENST00000487747 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.23□□□□□ -1.415e-7■■■■□ 23.7
SMC4-219ENST00000487747 TIA1P31483 386 aaKnown RBP eCLIP2.55□□□□□ -25e-7■■■■□ 23.6
SMC4-219ENST00000487747 SF3B4Q15427 424 aaKnown RBP eCLIP4.48□□□□□ -1.691e-7■■■■□ 22.3
SMC4-219ENST00000487747 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.03□□□□□ -2.418e-10■■■■□ 19.5
SMC4-219ENST00000487747 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.45□□□□□ -1.862e-11■■■□□ 18.8
SMC4-219ENST00000487747 TRA2AQ13595 282 aaKnown RBP eCLIP3.16□□□□□ -1.97e-7■■■□□ 15.1
SMC4-219ENST00000487747 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.21□□□□□ -1.747e-7■■□□□ 12.7
SMC4-219ENST00000487747 ZNF622Q969S3 477 aaKnown RBP eCLIP3.08□□□□□ -1.921e-7■■□□□ 12.5
SMC4-219ENST00000487747 FMR1Q06787 632 aaKnown RBP eCLIP8.33□□□□□ -1.085e-7■□□□□ 11.2
SMC4-219ENST00000487747 EFTUD2Q15029 972 aaKnown RBP eCLIP3.27□□□□□ -1.892e-8■□□□□ 10.7
SMC4-219ENST00000487747 CPSF6Q16630 551 aaKnown RBP eCLIP8.45□□□□□ -1.062e-6■□□□□ 10
SMC4-219ENST00000487747 GPKOWQ92917 476 aaPredicted RBP eCLIP10.63□□□□□ -0.711e-13■□□□□ 9.1
Retrieved 87 of 87 RNA–protein pairs in 49.3 ms