RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 NISCHQ9Y2I1 1504 aa24.82■■□□□ 1.56
CPSF4-213ENST00000484112 ABCC9O60706 1549 aa22.64■■□□□ 1.21
CPSF4-213ENST00000484112 CCDC180Q9P1Z9 1646 aa22.28■■□□□ 1.16
CPSF4-213ENST00000484112 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
CPSF4-213ENST00000484112 RB1CC1Q8TDY2 1594 aa21.38■■□□□ 1.01
CPSF4-213ENST00000484112 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
CPSF4-213ENST00000484112 NACADO15069 1562 aa21.17■□□□□ 0.98
CPSF4-213ENST00000484112 PABPN1Q86U42 306 aaKnown RBP eCLIP21.12■□□□□ 0.97
CPSF4-213ENST00000484112 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
CPSF4-213ENST00000484112 MYO15BQ96JP2 1530 aa20.75■□□□□ 0.91
CPSF4-213ENST00000484112 BICRAQ9NZM4 1560 aa20.74■□□□□ 0.91
CPSF4-213ENST00000484112 ZCCHC6Q5VYS8 1495 aaKnown RBP20.5■□□□□ 0.87
CPSF4-213ENST00000484112 DCAF1Q9Y4B6 1507 aa20.43■□□□□ 0.86
CPSF4-213ENST00000484112 SCRIBQ14160 1630 aa20.4■□□□□ 0.86
CPSF4-213ENST00000484112 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
CPSF4-213ENST00000484112 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
CPSF4-213ENST00000484112 CC2D2AQ9P2K1 1620 aa20.38■□□□□ 0.85
CPSF4-213ENST00000484112 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
CPSF4-213ENST00000484112 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
CPSF4-213ENST00000484112 NCAPD3P42695 1498 aa19.56■□□□□ 0.72
CPSF4-213ENST00000484112 ERCC6Q03468 1493 aa19.56■□□□□ 0.72
CPSF4-213ENST00000484112 CUX2O14529 1486 aa19.52■□□□□ 0.72
CPSF4-213ENST00000484112 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
CPSF4-213ENST00000484112 SMARCA2P51531 1590 aa19.4■□□□□ 0.7
CPSF4-213ENST00000484112 SMARCA4P51532 1647 aa19.39■□□□□ 0.69
CPSF4-213ENST00000484112 NESP48681 1621 aa19.37■□□□□ 0.69
CPSF4-213ENST00000484112 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
CPSF4-213ENST00000484112 BAZ1BQ9UIG0 1483 aaKnown RBP19.31■□□□□ 0.68
CPSF4-213ENST00000484112 BAZ1AQ9NRL2 1556 aaPredicted RBP19.27■□□□□ 0.68
CPSF4-213ENST00000484112 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
CPSF4-213ENST00000484112 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
CPSF4-213ENST00000484112 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
CPSF4-213ENST00000484112 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
CPSF4-213ENST00000484112 PDS5BQ9NTI5 1447 aa19.08■□□□□ 0.65
CPSF4-213ENST00000484112 KIF21AQ7Z4S6 1674 aa19.05■□□□□ 0.64
CPSF4-213ENST00000484112 CADPSQ9ULU8 1353 aa19■□□□□ 0.63
CPSF4-213ENST00000484112 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
CPSF4-213ENST00000484112 MRC2Q9UBG0 1479 aa18.92■□□□□ 0.62
CPSF4-213ENST00000484112 WIZO95785 1651 aa18.91■□□□□ 0.62
CPSF4-213ENST00000484112 WDR62O43379 1518 aa18.84■□□□□ 0.61
CPSF4-213ENST00000484112 CEP164Q9UPV0 1460 aa18.81■□□□□ 0.6
CPSF4-213ENST00000484112 FANCD2Q9BXW9 1451 aa18.78■□□□□ 0.6
CPSF4-213ENST00000484112 CFTRP13569 1480 aa18.71■□□□□ 0.59
CPSF4-213ENST00000484112 OSCARQ8IYS5 282 aa18.7■□□□□ 0.58
CPSF4-213ENST00000484112 RSF1Q96T23 1441 aaPredicted RBP18.69■□□□□ 0.58
CPSF4-213ENST00000484112 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
CPSF4-213ENST00000484112 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
CPSF4-213ENST00000484112 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
CPSF4-213ENST00000484112 ZNF608Q9ULD9 1512 aaPredicted RBP18.45■□□□□ 0.54
CPSF4-213ENST00000484112 IFT140Q96RY7 1462 aa18.44■□□□□ 0.54
CPSF4-213ENST00000484112 PRDM2Q13029 1718 aa18.41■□□□□ 0.54
CPSF4-213ENST00000484112 RIMBP3CA6NJZ7 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 RIMBP3BA6NNM3 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 RIMBP3Q9UFD9 1639 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 TOPBP1Q92547 1522 aa18.39■□□□□ 0.53
CPSF4-213ENST00000484112 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
CPSF4-213ENST00000484112 ABCC8Q09428 1581 aa18.31■□□□□ 0.52
CPSF4-213ENST00000484112 CYB5RLQ6IPT4 315 aa18.31■□□□□ 0.52
CPSF4-213ENST00000484112 FBLN2P98095 1184 aa18.3■□□□□ 0.52
CPSF4-213ENST00000484112 AQRO60306 1485 aaKnown RBP eCLIP18.29■□□□□ 0.522e-8■■■■■ 124.8
CPSF4-213ENST00000484112 EIF4G3O43432 1585 aaKnown RBP18.29■□□□□ 0.52
CPSF4-213ENST00000484112 DNMBPQ6XZF7 1577 aa18.27■□□□□ 0.52
CPSF4-213ENST00000484112 TRHP20396 242 aaPredicted RBP18.21■□□□□ 0.51
CPSF4-213ENST00000484112 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
CPSF4-213ENST00000484112 CHD1O14646 1710 aa18.19■□□□□ 0.5
CPSF4-213ENST00000484112 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
CPSF4-213ENST00000484112 RAD54L2Q9Y4B4 1467 aa18.17■□□□□ 0.5
CPSF4-213ENST00000484112 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
CPSF4-213ENST00000484112 SOGA1O94964 1423 aa18.15■□□□□ 0.5
CPSF4-213ENST00000484112 ARAP1Q96P48 1450 aa18.13■□□□□ 0.49
CPSF4-213ENST00000484112 CHMP7Q8WUX9 453 aaPredicted RBP18.09■□□□□ 0.49
CPSF4-213ENST00000484112 SNAPC4Q5SXM2 1469 aa18.07■□□□□ 0.48
CPSF4-213ENST00000484112 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
CPSF4-213ENST00000484112 CUX1P39880 1505 aa17.99■□□□□ 0.47
CPSF4-213ENST00000484112 GRIN2BQ13224 1484 aa17.97■□□□□ 0.47
CPSF4-213ENST00000484112 MAGI1Q96QZ7 1491 aaPredicted RBP17.97■□□□□ 0.47
CPSF4-213ENST00000484112 SYNJ1O43426 1573 aa17.96■□□□□ 0.47
CPSF4-213ENST00000484112 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
CPSF4-213ENST00000484112 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
CPSF4-213ENST00000484112 SYNJ2O15056 1496 aa17.93■□□□□ 0.46
CPSF4-213ENST00000484112 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.45
CPSF4-213ENST00000484112 SUPT5HO00267 1087 aaKnown RBP17.86■□□□□ 0.45
CPSF4-213ENST00000484112 PBRM1Q86U86 1689 aa17.84■□□□□ 0.45
CPSF4-213ENST00000484112 AEBP2Q6ZN18 517 aaPredicted RBP17.83■□□□□ 0.44
CPSF4-213ENST00000484112 ABCA10Q8WWZ4 1543 aa17.81■□□□□ 0.44
CPSF4-213ENST00000484112 ABCA5Q8WWZ7 1642 aa17.77■□□□□ 0.44
CPSF4-213ENST00000484112 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
CPSF4-213ENST00000484112 GRIN2AQ12879 1464 aa17.74■□□□□ 0.43
CPSF4-213ENST00000484112 ERCC6L2Q5T890 1561 aa17.72■□□□□ 0.43
CPSF4-213ENST00000484112 CEP170Q5SW79 1584 aa17.67■□□□□ 0.42
CPSF4-213ENST00000484112 NUP160Q12769 1436 aa17.67■□□□□ 0.42
CPSF4-213ENST00000484112 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
CPSF4-213ENST00000484112 FHAD1B1AJZ9 1412 aa17.65■□□□□ 0.42
CPSF4-213ENST00000484112 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
CPSF4-213ENST00000484112 BIVM-ERCC5R4GMW8 1640 aa17.6■□□□□ 0.41
CPSF4-213ENST00000484112 JPH4Q96JJ6 628 aa17.58■□□□□ 0.4
CPSF4-213ENST00000484112 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
CPSF4-213ENST00000484112 PRG4Q92954 1404 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-213ENST00000484112 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
CPSF4-213ENST00000484112 NPM1P06748 294 aaKnown RBP eCLIP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms