RNA: ENST00000472991.5

SMC4-214, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-214ENST00000472991 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.41□□□□□ -0.741e-147■■■■■ 345.5
SMC4-214ENST00000472991 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.78□□□□□ -0.682e-144■■■■■ 553.7
SMC4-214ENST00000472991 YWHAGP61981 247 aaKnown RBP eCLIP9.52□□□□□ -0.891e-117■■■■■ 400.8
SMC4-214ENST00000472991 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.43□□□□□ -1.064e-98■■■■■ 943.1
SMC4-214ENST00000472991 LSM11P83369 360 aaKnown RBP eCLIP12.16□□□□□ -0.467e-97■■■■■ 245.7
SMC4-214ENST00000472991 AGGF1Q8N302 714 aaeCLIP8.99□□□□□ -0.972e-85■■■■■ 286.7
SMC4-214ENST00000472991 DDX3XO00571 662 aaKnown RBP eCLIP9.5□□□□□ -0.894e-78■■■■■ 527.9
SMC4-214ENST00000472991 RBM15Q96T37 977 aaKnown RBP eCLIP9.16□□□□□ -0.945e-67■■■■■ 212.6
SMC4-214ENST00000472991 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.57□□□□□ -0.46e-65■■■■■ 143.5
SMC4-214ENST00000472991 RPS3P23396 243 aaKnown RBP eCLIP8.91□□□□□ -0.987e-64■■■■■ 337.8
SMC4-214ENST00000472991 AARSP49588 968 aaKnown RBP eCLIP9.78□□□□□ -0.843e-49■■■■■ 252.4
SMC4-214ENST00000472991 GTF2F1P35269 517 aaKnown RBP eCLIP9.76□□□□□ -0.858e-49■■■■■ 172.1
SMC4-214ENST00000472991 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.28□□□□□ -0.925e-47■■■■■ 274.1
SMC4-214ENST00000472991 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.9□□□□□ -0.987e-44■■■■■ 137.4
SMC4-214ENST00000472991 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.72□□□□□ -0.852e-41■■■■■ 207.1
SMC4-214ENST00000472991 G3BP1Q13283 466 aaKnown RBP eCLIP11.25□□□□□ -0.611e-39■■■■■ 140
SMC4-214ENST00000472991 HLTFQ14527 1009 aaKnown RBP eCLIP8.94□□□□□ -0.985e-35■■■■■ 127.1
SMC4-214ENST00000472991 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.86□□□□□ -0.674e-34■■■■■ 131.8
SMC4-214ENST00000472991 SF3B1O75533 1304 aaKnown RBP eCLIP9.82□□□□□ -0.847e-33■■■■■ 320.9
SMC4-214ENST00000472991 PPIGQ13427 754 aaKnown RBP eCLIP10.09□□□□□ -0.792e-27■■■■■ 81.9
SMC4-214ENST00000472991 DDX21Q9NR30 783 aaKnown RBP eCLIP11.7□□□□□ -0.541e-26■■■■■ 198.7
SMC4-214ENST00000472991 TAF15Q92804 592 aaKnown RBP eCLIP7.29□□□□□ -1.247e-26■■■■□ 25.9
SMC4-214ENST00000472991 AKAP1Q92667 903 aaKnown RBP eCLIP7.87□□□□□ -1.154e-24■■■■■ 140.6
SMC4-214ENST00000472991 RBM22Q9NW64 420 aaKnown RBP eCLIP9.19□□□□□ -0.945e-24■■■■■ 66.5
SMC4-214ENST00000472991 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.01□□□□□ -0.814e-23■■■■■ 72.8
SMC4-214ENST00000472991 HNRNPUQ00839 825 aaKnown RBP eCLIP11.8□□□□□ -0.522e-22■■■■■ 68.1
SMC4-214ENST00000472991 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.56□□□□□ -0.882e-20■■■□□ 18.8
SMC4-214ENST00000472991 WDR43Q15061 677 aaKnown RBP eCLIP12.09□□□□□ -0.475e-20■■■■■ 85.2
SMC4-214ENST00000472991 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.46□□□□□ -0.93e-18■■■■■ 78.4
SMC4-214ENST00000472991 NCBP2P52298 156 aaKnown RBP eCLIP8.44□□□□□ -1.062e-17■■■■■ 76.5
SMC4-214ENST00000472991 RPS11P62280 158 aaKnown RBP eCLIP7.63□□□□□ -1.198e-17■■■■■ 578.9
SMC4-214ENST00000472991 SSBP05455 408 aaKnown RBP eCLIP10.1□□□□□ -0.799e-17■■■■■ 55.5
SMC4-214ENST00000472991 EIF3DO15371 548 aaKnown RBP eCLIP9.94□□□□□ -0.822e-16■■■■■ 56.2
SMC4-214ENST00000472991 SMNDC1O75940 238 aaKnown RBP eCLIP8.33□□□□□ -1.082e-16■■■■■ 67.6
SMC4-214ENST00000472991 NOLC1Q14978 699 aaKnown RBP eCLIP9.94□□□□□ -0.824e-16■■■■■ 30.2
SMC4-214ENST00000472991 HNRNPLP14866 589 aaKnown RBP eCLIP9.3□□□□□ -0.922e-15■■■■■ 47.4
SMC4-214ENST00000472991 KHSRPQ92945 711 aaKnown RBP eCLIP12.42□□□□□ -0.423e-15■■■■■ 43.1
SMC4-214ENST00000472991 GRSF1Q12849 480 aaKnown RBP eCLIP9.37□□□□□ -0.912e-14■■■■■ 48.8
SMC4-214ENST00000472991 ILF3Q12906 894 aaKnown RBP eCLIP8.96□□□□□ -0.988e-14■■■■■ 40.3
SMC4-214ENST00000472991 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.32□□□□□ -1.081e-13■■■■■ 65.9
SMC4-214ENST00000472991 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.97□□□□□ -0.972e-13■■■■■ 56.3
SMC4-214ENST00000472991 GPKOWQ92917 476 aaPredicted RBP eCLIP10.49□□□□□ -0.734e-13■□□□□ 10.3
SMC4-214ENST00000472991 HNRNPKP61978 463 aaKnown RBP eCLIP8.99□□□□□ -0.975e-13■■■■■ 46
SMC4-214ENST00000472991 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.66□□□□□ -1.025e-13■■■■■ 348.1
SMC4-214ENST00000472991 EIF3GO75821 320 aaKnown RBP eCLIP6.72□□□□□ -1.338e-13■■■■■ 59.2
SMC4-214ENST00000472991 TROVE2P10155 538 aaKnown RBP eCLIP8.44□□□□□ -1.061e-12■■■■■ 61.2
SMC4-214ENST00000472991 PCBP1Q15365 356 aaKnown RBP eCLIP9.99□□□□□ -0.813e-12■■■■□ 20.8
SMC4-214ENST00000472991 LARP4Q71RC2 724 aaKnown RBP eCLIP8.48□□□□□ -1.054e-12■■■■□ 24.2
SMC4-214ENST00000472991 ZC3H11AO75152 810 aaKnown RBP eCLIP9.89□□□□□ -0.834e-12■■■■■ 110
SMC4-214ENST00000472991 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.39□□□□□ -1.077e-12■■■■■ 38.5
SMC4-214ENST00000472991 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.471e-11■■■■□ 26.2
SMC4-214ENST00000472991 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.68□□□□□ -1.188e-11■■■■■ 62
SMC4-214ENST00000472991 FXR2P51116 673 aaKnown RBP eCLIP15.26■□□□□ 0.032e-10■■■■■ 37.2
SMC4-214ENST00000472991 SF3A3Q12874 501 aaKnown RBP eCLIP8.44□□□□□ -1.064e-10■■■■■ 210.9
SMC4-214ENST00000472991 HNRNPMP52272 730 aaKnown RBP eCLIP14.04□□□□□ -0.162e-9■□□□□ 8.7
SMC4-214ENST00000472991 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.07□□□□□ -0.82e-9■■■■■ 123.9
SMC4-214ENST00000472991 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.9□□□□□ -0.183e-9■■■■■ 72.1
SMC4-214ENST00000472991 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.32□□□□□ -1.084e-9■■■■■ 118.1
SMC4-214ENST00000472991 SND1Q7KZF4 910 aaKnown RBP eCLIP9.42□□□□□ -0.96e-9■■■■■ 32.8
SMC4-214ENST00000472991 PABPC4Q13310 644 aaKnown RBP eCLIP10.68□□□□□ -0.78e-9■■■■■ 603.5
SMC4-214ENST00000472991 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.75□□□□□ -0.851e-8■■■■■ 54.3
SMC4-214ENST00000472991 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.84□□□□□ -0.991e-8■■■■■ 268.2
SMC4-214ENST00000472991 SF3B4Q15427 424 aaKnown RBP eCLIP8.15□□□□□ -1.12e-8■■■■□ 23.1
SMC4-214ENST00000472991 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.082e-8■■■■■ 155.3
SMC4-214ENST00000472991 NONOQ15233 471 aaKnown RBP eCLIP10.34□□□□□ -0.752e-8■■■■■ 98.1
SMC4-214ENST00000472991 RBFOX2O43251 390 aaKnown RBP eCLIP7.17□□□□□ -1.263e-8■■■■■ 54.1
SMC4-214ENST00000472991 AATFQ9NY61 560 aaKnown RBP eCLIP10.99□□□□□ -0.654e-8■■■■■ 116
SMC4-214ENST00000472991 MATR3P43243 847 aaKnown RBP eCLIP9.94□□□□□ -0.827e-8■■□□□ 11.8
SMC4-214ENST00000472991 EFTUD2Q15029 972 aaKnown RBP eCLIP8.88□□□□□ -0.997e-8■■□□□ 12.6
SMC4-214ENST00000472991 NIPBLQ6KC79 2804 aaeCLIP7.48□□□□□ -1.218e-8■■■■■ 47
SMC4-214ENST00000472991 SRSF1Q07955 248 aaKnown RBP eCLIP8.16□□□□□ -1.19e-8■■□□□ 13.7
SMC4-214ENST00000472991 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.39e-8■■■■■ 40.4
SMC4-214ENST00000472991 U2AF2P26368 475 aaKnown RBP eCLIP10.3□□□□□ -0.761e-7■■■■■ 37.8
SMC4-214ENST00000472991 NIP7Q9Y221 180 aaKnown RBP eCLIP11.62□□□□□ -0.551e-7■■■■■ 83.2
SMC4-214ENST00000472991 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.39□□□□□ -0.111e-7■■■□□ 17.3
SMC4-214ENST00000472991 TIA1P31483 386 aaKnown RBP eCLIP8.53□□□□□ -1.041e-7■■■□□ 16.3
SMC4-214ENST00000472991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.64■□□□□ 0.412e-7■■■■■ 32.9
SMC4-214ENST00000472991 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.57□□□□□ -0.882e-7■■■■□ 26.2
SMC4-214ENST00000472991 FMR1Q06787 632 aaKnown RBP eCLIP10.99□□□□□ -0.653e-7■□□□□ 10
SMC4-214ENST00000472991 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.61□□□□□ -0.875e-7■■■■□ 23.7
SMC4-214ENST00000472991 QKIQ96PU8 341 aaKnown RBP eCLIP9.2□□□□□ -0.946e-7■■■■■ 232.7
SMC4-214ENST00000472991 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.49□□□□□ -0.897e-7■■□□□ 12.7
SMC4-214ENST00000472991 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■■ 406.9
SMC4-214ENST00000472991 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.49□□□□□ -1.052e-6■■■■■ 54.3
SMC4-214ENST00000472991 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.75□□□□□ -0.852e-6■■■■■ 539.2
Retrieved 85 of 85 RNA–protein pairs in 50.3 ms