RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.43□□□□□ -1.064e-98■■■■■ 943.1
SMC4-213ENST00000472282 PABPC4Q13310 644 aaKnown RBP eCLIP10.92□□□□□ -0.668e-9■■■■■ 603.5
SMC4-213ENST00000472282 RPS11P62280 158 aaKnown RBP eCLIP7.63□□□□□ -1.198e-17■■■■■ 578.9
SMC4-213ENST00000472282 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.78□□□□□ -0.682e-144■■■■■ 553.7
SMC4-213ENST00000472282 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.75□□□□□ -0.852e-6■■■■■ 539.2
SMC4-213ENST00000472282 DDX3XO00571 662 aaKnown RBP eCLIP9.5□□□□□ -0.894e-78■■■■■ 527.9
SMC4-213ENST00000472282 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■■ 406.9
SMC4-213ENST00000472282 YWHAGP61981 247 aaKnown RBP eCLIP9.52□□□□□ -0.891e-117■■■■■ 400.8
SMC4-213ENST00000472282 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.66□□□□□ -1.025e-13■■■■■ 348.1
SMC4-213ENST00000472282 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.88□□□□□ -0.671e-147■■■■■ 345.5
SMC4-213ENST00000472282 RPS3P23396 243 aaKnown RBP eCLIP8.91□□□□□ -0.987e-64■■■■■ 337.8
SMC4-213ENST00000472282 SF3B1O75533 1304 aaKnown RBP eCLIP9.91□□□□□ -0.827e-33■■■■■ 320.9
SMC4-213ENST00000472282 AGGF1Q8N302 714 aaeCLIP8.99□□□□□ -0.972e-85■■■■■ 286.7
SMC4-213ENST00000472282 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.28□□□□□ -0.925e-47■■■■■ 274.1
SMC4-213ENST00000472282 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.84□□□□□ -0.991e-8■■■■■ 268.2
SMC4-213ENST00000472282 AARSP49588 968 aaKnown RBP eCLIP9.81□□□□□ -0.843e-49■■■■■ 252.4
SMC4-213ENST00000472282 LSM11P83369 360 aaKnown RBP eCLIP12.34□□□□□ -0.437e-97■■■■■ 245.7
SMC4-213ENST00000472282 QKIQ96PU8 341 aaKnown RBP eCLIP9.2□□□□□ -0.947e-7■■■■■ 232.7
SMC4-213ENST00000472282 RBM15Q96T37 977 aaKnown RBP eCLIP9.16□□□□□ -0.945e-67■■■■■ 212.6
SMC4-213ENST00000472282 SF3A3Q12874 501 aaKnown RBP eCLIP8.44□□□□□ -1.064e-10■■■■■ 210.9
SMC4-213ENST00000472282 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.84□□□□□ -0.832e-41■■■■■ 207.1
SMC4-213ENST00000472282 DDX21Q9NR30 783 aaKnown RBP eCLIP11.79□□□□□ -0.521e-26■■■■■ 198.7
SMC4-213ENST00000472282 GTF2F1P35269 517 aaKnown RBP eCLIP10.19□□□□□ -0.788e-49■■■■■ 172.1
SMC4-213ENST00000472282 AQRO60306 1485 aaKnown RBP eCLIP16.4■□□□□ 0.222e-8■■■■■ 155.3
SMC4-213ENST00000472282 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.8□□□□□ -0.366e-65■■■■■ 143.5
SMC4-213ENST00000472282 AKAP1Q92667 903 aaKnown RBP eCLIP7.99□□□□□ -1.134e-24■■■■■ 140.6
SMC4-213ENST00000472282 G3BP1Q13283 466 aaKnown RBP eCLIP11.25□□□□□ -0.611e-39■■■■■ 140
SMC4-213ENST00000472282 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.9□□□□□ -0.987e-44■■■■■ 137.4
SMC4-213ENST00000472282 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.06□□□□□ -0.644e-34■■■■■ 131.8
SMC4-213ENST00000472282 HLTFQ14527 1009 aaKnown RBP eCLIP9□□□□□ -0.975e-35■■■■■ 127.1
SMC4-213ENST00000472282 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.55□□□□□ -0.722e-9■■■■■ 123.9
SMC4-213ENST00000472282 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.32□□□□□ -1.084e-9■■■■■ 118.1
SMC4-213ENST00000472282 AATFQ9NY61 560 aaKnown RBP eCLIP11.08□□□□□ -0.644e-8■■■■■ 116
SMC4-213ENST00000472282 ZC3H11AO75152 810 aaKnown RBP eCLIP10.06□□□□□ -0.84e-12■■■■■ 110
SMC4-213ENST00000472282 NONOQ15233 471 aaKnown RBP eCLIP10.34□□□□□ -0.752e-8■■■■■ 98.1
SMC4-213ENST00000472282 WDR43Q15061 677 aaKnown RBP eCLIP12.09□□□□□ -0.475e-20■■■■■ 85.2
SMC4-213ENST00000472282 NIP7Q9Y221 180 aaKnown RBP eCLIP11.91□□□□□ -0.51e-7■■■■■ 83.2
SMC4-213ENST00000472282 PPIGQ13427 754 aaKnown RBP eCLIP10.5□□□□□ -0.732e-27■■■■■ 81.9
SMC4-213ENST00000472282 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.46□□□□□ -0.93e-18■■■■■ 78.4
SMC4-213ENST00000472282 NCBP2P52298 156 aaKnown RBP eCLIP8.44□□□□□ -1.062e-17■■■■■ 76.5
SMC4-213ENST00000472282 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.36□□□□□ -0.754e-23■■■■■ 72.8
SMC4-213ENST00000472282 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.09□□□□□ -0.153e-9■■■■■ 72.1
SMC4-213ENST00000472282 HNRNPUQ00839 825 aaKnown RBP eCLIP11.8□□□□□ -0.522e-22■■■■■ 68.1
SMC4-213ENST00000472282 SMNDC1O75940 238 aaKnown RBP eCLIP8.32□□□□□ -1.082e-16■■■■■ 67.6
SMC4-213ENST00000472282 RBM22Q9NW64 420 aaKnown RBP eCLIP9.19□□□□□ -0.945e-24■■■■■ 66.5
SMC4-213ENST00000472282 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.32□□□□□ -1.081e-13■■■■■ 65.9
SMC4-213ENST00000472282 TROVE2P10155 538 aaKnown RBP eCLIP8.44□□□□□ -1.061e-12■■■■■ 61.2
SMC4-213ENST00000472282 EIF3GO75821 320 aaKnown RBP eCLIP6.72□□□□□ -1.338e-13■■■■■ 59.2
SMC4-213ENST00000472282 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.79□□□□□ -1.164e-9■■■■■ 58.3
SMC4-213ENST00000472282 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.97□□□□□ -0.972e-13■■■■■ 56.3
SMC4-213ENST00000472282 EIF3DO15371 548 aaKnown RBP eCLIP9.94□□□□□ -0.822e-16■■■■■ 56.2
SMC4-213ENST00000472282 SSBP05455 408 aaKnown RBP eCLIP10.1□□□□□ -0.799e-17■■■■■ 55.5
SMC4-213ENST00000472282 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.49□□□□□ -1.052e-6■■■■■ 54.3
SMC4-213ENST00000472282 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.75□□□□□ -0.851e-8■■■■■ 54.3
SMC4-213ENST00000472282 RBFOX2O43251 390 aaKnown RBP eCLIP7.17□□□□□ -1.263e-8■■■■■ 54.1
SMC4-213ENST00000472282 GRSF1Q12849 480 aaKnown RBP eCLIP9.58□□□□□ -0.882e-14■■■■■ 48.8
SMC4-213ENST00000472282 HNRNPLP14866 589 aaKnown RBP eCLIP9.56□□□□□ -0.882e-15■■■■■ 47.4
SMC4-213ENST00000472282 NIPBLQ6KC79 2804 aaeCLIP7.86□□□□□ -1.158e-8■■■■■ 47
SMC4-213ENST00000472282 HNRNPKP61978 463 aaKnown RBP eCLIP9.1□□□□□ -0.955e-13■■■■■ 46
SMC4-213ENST00000472282 KHSRPQ92945 711 aaKnown RBP eCLIP12.44□□□□□ -0.423e-15■■■■■ 43.1
SMC4-213ENST00000472282 ILF3Q12906 894 aaKnown RBP eCLIP8.97□□□□□ -0.978e-14■■■■■ 40.3
SMC4-213ENST00000472282 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.49□□□□□ -1.057e-12■■■■■ 38.5
SMC4-213ENST00000472282 U2AF2P26368 475 aaKnown RBP eCLIP10.3□□□□□ -0.761e-7■■■■■ 37.8
SMC4-213ENST00000472282 FXR2P51116 673 aaKnown RBP eCLIP15.72■□□□□ 0.112e-10■■■■■ 37.2
SMC4-213ENST00000472282 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.29□□□□□ -0.281e-7■■■■■ 35.2
SMC4-213ENST00000472282 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.462e-7■■■■■ 32.9
SMC4-213ENST00000472282 SND1Q7KZF4 910 aaKnown RBP eCLIP9.42□□□□□ -0.96e-9■■■■■ 32.8
SMC4-213ENST00000472282 NOLC1Q14978 699 aaKnown RBP eCLIP9.94□□□□□ -0.824e-16■■■■■ 30.2
SMC4-213ENST00000472282 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.83□□□□□ -0.842e-7■■■■□ 26.2
SMC4-213ENST00000472282 UPF1Q92900 1129 aaKnown RBP eCLIP13.2□□□□□ -0.31e-11■■■■□ 26.2
SMC4-213ENST00000472282 TAF15Q92804 592 aaKnown RBP eCLIP7.55□□□□□ -1.27e-26■■■■□ 25.9
SMC4-213ENST00000472282 LARP4Q71RC2 724 aaKnown RBP eCLIP8.48□□□□□ -1.054e-12■■■■□ 24.2
SMC4-213ENST00000472282 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.61□□□□□ -0.875e-7■■■■□ 23.7
SMC4-213ENST00000472282 SF3B4Q15427 424 aaKnown RBP eCLIP8.15□□□□□ -1.12e-8■■■■□ 23.1
SMC4-213ENST00000472282 PCBP1Q15365 356 aaKnown RBP eCLIP9.99□□□□□ -0.813e-12■■■■□ 20.8
SMC4-213ENST00000472282 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.56□□□□□ -0.881e-12■■■□□ 18.8
SMC4-213ENST00000472282 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.97□□□□□ -0.011e-7■■■□□ 17.3
SMC4-213ENST00000472282 TIA1P31483 386 aaKnown RBP eCLIP8.53□□□□□ -1.041e-7■■■□□ 16.3
SMC4-213ENST00000472282 SRSF1Q07955 248 aaKnown RBP eCLIP8.72□□□□□ -1.019e-8■■□□□ 13.7
SMC4-213ENST00000472282 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.49□□□□□ -0.897e-7■■□□□ 12.7
SMC4-213ENST00000472282 EFTUD2Q15029 972 aaKnown RBP eCLIP8.88□□□□□ -0.997e-8■■□□□ 12.6
SMC4-213ENST00000472282 MATR3P43243 847 aaKnown RBP eCLIP9.94□□□□□ -0.827e-8■■□□□ 11.8
SMC4-213ENST00000472282 GPKOWQ92917 476 aaPredicted RBP eCLIP10.49□□□□□ -0.734e-13■□□□□ 10.3
SMC4-213ENST00000472282 FMR1Q06787 632 aaKnown RBP eCLIP11.66□□□□□ -0.543e-7■□□□□ 10
SMC4-213ENST00000472282 ZNF622Q969S3 477 aaKnown RBP eCLIP11.93□□□□□ -0.51e-6■□□□□ 8.9
SMC4-213ENST00000472282 HNRNPMP52272 730 aaKnown RBP eCLIP14.52□□□□□ -0.092e-9■□□□□ 8.7
Retrieved 86 of 86 RNA–protein pairs in 67.7 ms