RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.32■□□□□ 0.841e-147■■■■■ 345.5
SMC4-209ENST00000468653 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.26■■□□□ 1.152e-144■■■■■ 553.7
SMC4-209ENST00000468653 YWHAGP61981 247 aaKnown RBP eCLIP19.75■□□□□ 0.751e-117■■■■■ 400.8
SMC4-209ENST00000468653 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.49■□□□□ 0.554e-98■■■■■ 943.1
SMC4-209ENST00000468653 LSM11P83369 360 aaKnown RBP eCLIP17.45■□□□□ 0.387e-97■■■■■ 245.7
SMC4-209ENST00000468653 AGGF1Q8N302 714 aaeCLIP19.36■□□□□ 0.692e-85■■■■■ 286.7
SMC4-209ENST00000468653 DDX3XO00571 662 aaKnown RBP eCLIP20.41■□□□□ 0.864e-78■■■■■ 527.9
SMC4-209ENST00000468653 RBM15Q96T37 977 aaKnown RBP eCLIP19.53■□□□□ 0.725e-67■■■■■ 212.6
SMC4-209ENST00000468653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.41■■□□□ 1.666e-65■■■■■ 143.5
SMC4-209ENST00000468653 RPS3P23396 243 aaKnown RBP eCLIP18.82■□□□□ 0.67e-64■■■■■ 337.8
SMC4-209ENST00000468653 AARSP49588 968 aaKnown RBP eCLIP20.03■□□□□ 0.83e-49■■■■■ 252.4
SMC4-209ENST00000468653 GTF2F1P35269 517 aaKnown RBP eCLIP20.27■□□□□ 0.848e-49■■■■■ 172.1
SMC4-209ENST00000468653 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.02■□□□□ 0.85e-47■■■■■ 274.1
SMC4-209ENST00000468653 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.18■□□□□ 0.827e-44■■■■■ 137.4
SMC4-209ENST00000468653 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.14■□□□□ 0.332e-41■■■■■ 207.1
SMC4-209ENST00000468653 G3BP1Q13283 466 aaKnown RBP eCLIP23.4■■□□□ 1.341e-39■■■■■ 140
SMC4-209ENST00000468653 HLTFQ14527 1009 aaKnown RBP eCLIP19.79■□□□□ 0.765e-35■■■■■ 127.1
SMC4-209ENST00000468653 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.93■■□□□ 1.14e-34■■■■■ 131.8
SMC4-209ENST00000468653 SF3B1O75533 1304 aaKnown RBP eCLIP19.87■□□□□ 0.777e-33■■■■■ 320.9
SMC4-209ENST00000468653 PPIGQ13427 754 aaKnown RBP eCLIP19.75■□□□□ 0.752e-27■■■■■ 81.9
SMC4-209ENST00000468653 DDX21Q9NR30 783 aaKnown RBP eCLIP23.9■■□□□ 1.421e-26■■■■■ 198.7
SMC4-209ENST00000468653 TAF15Q92804 592 aaKnown RBP eCLIP15.18■□□□□ 0.027e-26■■■■□ 25.9
SMC4-209ENST00000468653 AKAP1Q92667 903 aaKnown RBP eCLIP16.49■□□□□ 0.234e-24■■■■■ 140.6
SMC4-209ENST00000468653 RBM22Q9NW64 420 aaKnown RBP eCLIP19.38■□□□□ 0.695e-24■■■■■ 66.5
SMC4-209ENST00000468653 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.91■□□□□ 0.784e-23■■■■■ 72.8
SMC4-209ENST00000468653 HNRNPUQ00839 825 aaKnown RBP eCLIP25.62■■□□□ 1.692e-22■■■■■ 68.1
SMC4-209ENST00000468653 WDR43Q15061 677 aaKnown RBP eCLIP25.41■■□□□ 1.665e-20■■■■■ 85.2
SMC4-209ENST00000468653 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.87■□□□□ 0.773e-18■■■■■ 78.4
SMC4-209ENST00000468653 NCBP2P52298 156 aaKnown RBP eCLIP17.94■□□□□ 0.462e-17■■■■■ 76.5
SMC4-209ENST00000468653 RPS11P62280 158 aaKnown RBP eCLIP16.77■□□□□ 0.288e-17■■■■■ 578.9
SMC4-209ENST00000468653 SSBP05455 408 aaKnown RBP eCLIP21.22■□□□□ 0.999e-17■■■■■ 55.5
SMC4-209ENST00000468653 EIF3DO15371 548 aaKnown RBP eCLIP20.95■□□□□ 0.942e-16■■■■■ 56.2
SMC4-209ENST00000468653 SMNDC1O75940 238 aaKnown RBP eCLIP17.46■□□□□ 0.392e-16■■■■■ 67.6
SMC4-209ENST00000468653 NOLC1Q14978 699 aaKnown RBP eCLIP20.8■□□□□ 0.924e-16■■■■■ 30.2
SMC4-209ENST00000468653 HNRNPLP14866 589 aaKnown RBP eCLIP18.82■□□□□ 0.62e-15■■■■■ 47.4
SMC4-209ENST00000468653 KHSRPQ92945 711 aaKnown RBP eCLIP19.9■□□□□ 0.783e-15■■■■■ 43.1
SMC4-209ENST00000468653 GRSF1Q12849 480 aaKnown RBP eCLIP18.74■□□□□ 0.592e-14■■■■■ 48.8
SMC4-209ENST00000468653 ILF3Q12906 894 aaKnown RBP eCLIP18.32■□□□□ 0.528e-14■■■■■ 40.3
SMC4-209ENST00000468653 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.96■□□□□ 0.471e-13■■■■■ 65.9
SMC4-209ENST00000468653 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.93■□□□□ 0.622e-13■■■■■ 56.3
SMC4-209ENST00000468653 GPKOWQ92917 476 aaPredicted RBP eCLIP21.84■■□□□ 1.093e-13■□□□□ 9.7
SMC4-209ENST00000468653 HNRNPKP61978 463 aaKnown RBP eCLIP18.16■□□□□ 0.55e-13■■■■■ 46
SMC4-209ENST00000468653 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.22■□□□□ 0.515e-13■■■■■ 220.5
SMC4-209ENST00000468653 EIF3GO75821 320 aaKnown RBP eCLIP14.97□□□□□ -0.018e-13■■■■■ 59.2
SMC4-209ENST00000468653 TROVE2P10155 538 aaKnown RBP eCLIP18.86■□□□□ 0.611e-12■■■■■ 61.2
SMC4-209ENST00000468653 PCBP1Q15365 356 aaKnown RBP eCLIP20.46■□□□□ 0.873e-12■■■■□ 20.8
SMC4-209ENST00000468653 LARP4Q71RC2 724 aaKnown RBP eCLIP18.49■□□□□ 0.554e-12■■■■□ 24.2
SMC4-209ENST00000468653 ZC3H11AO75152 810 aaKnown RBP eCLIP20.48■□□□□ 0.874e-12■■■■■ 110
SMC4-209ENST00000468653 U2AF1Q01081 240 aaKnown RBP eCLIP25.13■■□□□ 1.615e-12■■■■■ 47.2
SMC4-209ENST00000468653 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17■□□□□ 0.317e-12■■■■■ 38.5
SMC4-209ENST00000468653 UPF1Q92900 1129 aaKnown RBP eCLIP22.41■■□□□ 1.181e-11■■■■□ 26.2
SMC4-209ENST00000468653 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.89■□□□□ 0.933e-11■■■□□ 18.8
SMC4-209ENST00000468653 FXR2P51116 673 aaKnown RBP eCLIP21.43■■□□□ 1.022e-10■■■■■ 37.2
SMC4-209ENST00000468653 SF3A3Q12874 501 aaKnown RBP eCLIP18.92■□□□□ 0.624e-10■■■■■ 210.9
SMC4-209ENST00000468653 HNRNPMP52272 730 aaKnown RBP eCLIP27.94■■■□□ 2.062e-9■□□□□ 8.7
SMC4-209ENST00000468653 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.04■□□□□ 0.82e-9■■■■■ 123.9
SMC4-209ENST00000468653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.51■■■□□ 2.163e-9■■■■■ 72.1
SMC4-209ENST00000468653 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.09■□□□□ 0.013e-9■■■■■ 52.5
SMC4-209ENST00000468653 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.53■□□□□ 0.44e-9■■■■■ 118.1
SMC4-209ENST00000468653 SND1Q7KZF4 910 aaKnown RBP eCLIP19.75■□□□□ 0.756e-9■■■■■ 32.8
SMC4-209ENST00000468653 PABPC4Q13310 644 aaKnown RBP eCLIP21.28■■□□□ 18e-9■■■■■ 603.5
SMC4-209ENST00000468653 AQRO60306 1485 aaKnown RBP eCLIP30.01■■■□□ 2.391e-8■■■■■ 109.5
SMC4-209ENST00000468653 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.84■□□□□ 0.931e-8■■■■■ 54.3
SMC4-209ENST00000468653 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.76■□□□□ 0.751e-8■■■■■ 268.2
SMC4-209ENST00000468653 NONOQ15233 471 aaKnown RBP eCLIP21.66■■□□□ 1.062e-8■■■■■ 98.1
SMC4-209ENST00000468653 EFTUD2Q15029 972 aaKnown RBP eCLIP19.3■□□□□ 0.682e-8■■□□□ 12.6
SMC4-209ENST00000468653 RBFOX2O43251 390 aaKnown RBP eCLIP15.51■□□□□ 0.073e-8■■■■■ 54.1
SMC4-209ENST00000468653 AATFQ9NY61 560 aaKnown RBP eCLIP22.46■■□□□ 1.194e-8■■■■■ 116
SMC4-209ENST00000468653 SF3B4Q15427 424 aaKnown RBP eCLIP16.61■□□□□ 0.255e-8■■■■□ 22.8
SMC4-209ENST00000468653 MATR3P43243 847 aaKnown RBP eCLIP20.66■□□□□ 0.97e-8■■□□□ 11.8
SMC4-209ENST00000468653 NIPBLQ6KC79 2804 aaeCLIP14.08□□□□□ -0.168e-8■■■■■ 47
SMC4-209ENST00000468653 SRSF1Q07955 248 aaKnown RBP eCLIP15.62■□□□□ 0.099e-8■■□□□ 13.7
SMC4-209ENST00000468653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.3■■□□□ 1.481e-7■■■■■ 35.1
SMC4-209ENST00000468653 NIP7Q9Y221 180 aaKnown RBP eCLIP23.28■■□□□ 1.321e-7■■■■■ 83.2
SMC4-209ENST00000468653 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.11■■■□□ 2.091e-7■■■□□ 17.3
SMC4-209ENST00000468653 ZNF622Q969S3 477 aaKnown RBP eCLIP22.63■■□□□ 1.212e-7■■□□□ 13.9
SMC4-209ENST00000468653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.37■■□□□ 1.972e-7■■■■■ 32.9
SMC4-209ENST00000468653 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.73■□□□□ 0.752e-7■■■■□ 26.2
SMC4-209ENST00000468653 TIA1P31483 386 aaKnown RBP eCLIP18.2■□□□□ 0.52e-7■■■□□ 18.7
SMC4-209ENST00000468653 FMR1Q06787 632 aaKnown RBP eCLIP21.32■■□□□ 13e-7■□□□□ 10
SMC4-209ENST00000468653 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.13■□□□□ 0.815e-7■■■■□ 23.7
SMC4-209ENST00000468653 U2AF2P26368 475 aaKnown RBP eCLIP21.91■■□□□ 1.16e-7■■■■■ 34.1
SMC4-209ENST00000468653 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.51■□□□□ 0.877e-7■■□□□ 12.7
SMC4-209ENST00000468653 QKIQ96PU8 341 aaKnown RBP eCLIP19.59■□□□□ 0.737e-7■■■■■ 232.7
SMC4-209ENST00000468653 TRA2AQ13595 282 aaKnown RBP eCLIP17.68■□□□□ 0.421e-6■■■□□ 18.2
SMC4-209ENST00000468653 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.12■□□□□ 0.971e-6■■■■■ 406.9
SMC4-209ENST00000468653 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.12■□□□□ 0.492e-6■■■■■ 54.3
SMC4-209ENST00000468653 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.51■□□□□ 0.872e-6■■■■■ 539.2
Retrieved 88 of 88 RNA–protein pairs in 45.3 ms