RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.63■□□□□ 0.414e-98■■■■■ 943.1
SMC4-204ENST00000462787 RPS11P62280 158 aaKnown RBP eCLIP13.84□□□□□ -0.198e-17■■■■■ 578.9
SMC4-204ENST00000462787 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.38■□□□□ 0.212e-144■■■■■ 553.7
SMC4-204ENST00000462787 DDX3XO00571 662 aaKnown RBP eCLIP16.48■□□□□ 0.234e-78■■■■■ 527.9
SMC4-204ENST00000462787 PABPC4Q13310 644 aaKnown RBP eCLIP17.03■□□□□ 0.322e-6■■■■■ 455.6
SMC4-204ENST00000462787 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.32■□□□□ 0.21e-6■■■■■ 406.9
SMC4-204ENST00000462787 YWHAGP61981 247 aaKnown RBP eCLIP17.08■□□□□ 0.321e-117■■■■■ 400.8
SMC4-204ENST00000462787 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.91■□□□□ 0.461e-6■■■■■ 397.5
SMC4-204ENST00000462787 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.46■□□□□ 0.071e-147■■■■■ 345.5
SMC4-204ENST00000462787 RPS3P23396 243 aaKnown RBP eCLIP15.51■□□□□ 0.077e-64■■■■■ 337.8
SMC4-204ENST00000462787 AGGF1Q8N302 714 aaeCLIP17.05■□□□□ 0.322e-85■■■■■ 286.7
SMC4-204ENST00000462787 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.52■□□□□ 0.395e-47■■■■■ 274.1
SMC4-204ENST00000462787 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.23■□□□□ 0.351e-8■■■■■ 268.2
SMC4-204ENST00000462787 AARSP49588 968 aaKnown RBP eCLIP16.97■□□□□ 0.313e-49■■■■■ 252.4
SMC4-204ENST00000462787 LSM11P83369 360 aaKnown RBP eCLIP14.16□□□□□ -0.147e-97■■■■■ 245.7
SMC4-204ENST00000462787 QKIQ96PU8 341 aaKnown RBP eCLIP15.91■□□□□ 0.147e-7■■■■■ 232.7
SMC4-204ENST00000462787 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.52■□□□□ 0.235e-13■■■■■ 220.5
SMC4-204ENST00000462787 RBM15Q96T37 977 aaKnown RBP eCLIP16.8■□□□□ 0.285e-67■■■■■ 212.6
SMC4-204ENST00000462787 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.88□□□□□ -0.032e-41■■■■■ 207.1
SMC4-204ENST00000462787 DDX21Q9NR30 783 aaKnown RBP eCLIP17.68■□□□□ 0.421e-26■■■■■ 198.7
SMC4-204ENST00000462787 GTF2F1P35269 517 aaKnown RBP eCLIP18.61■□□□□ 0.578e-49■■■■■ 172.1
SMC4-204ENST00000462787 SF3B1O75533 1304 aaKnown RBP eCLIP15.88■□□□□ 0.131e-7■■■■■ 165.2
SMC4-204ENST00000462787 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.08■□□□□ 0.656e-65■■■■■ 143.5
SMC4-204ENST00000462787 AKAP1Q92667 903 aaKnown RBP eCLIP15.5■□□□□ 0.074e-24■■■■■ 140.6
SMC4-204ENST00000462787 G3BP1Q13283 466 aaKnown RBP eCLIP18.88■□□□□ 0.611e-39■■■■■ 140
SMC4-204ENST00000462787 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.33■□□□□ 0.537e-44■■■■■ 137.4
SMC4-204ENST00000462787 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.76■□□□□ 0.274e-34■■■■■ 131.8
SMC4-204ENST00000462787 HLTFQ14527 1009 aaKnown RBP eCLIP18.13■□□□□ 0.495e-35■■■■■ 127.1
SMC4-204ENST00000462787 SF3A3Q12874 501 aaKnown RBP eCLIP17.46■□□□□ 0.393e-7■■■■■ 122.4
SMC4-204ENST00000462787 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.2□□□□□ -0.144e-9■■■■■ 118.1
SMC4-204ENST00000462787 AATFQ9NY61 560 aaKnown RBP eCLIP17.32■□□□□ 0.364e-8■■■■■ 116
SMC4-204ENST00000462787 ZC3H11AO75152 810 aaKnown RBP eCLIP16.44■□□□□ 0.228e-7■■■■■ 110
SMC4-204ENST00000462787 NONOQ15233 471 aaKnown RBP eCLIP17.45■□□□□ 0.382e-8■■■■■ 98.1
SMC4-204ENST00000462787 WDR43Q15061 677 aaKnown RBP eCLIP20.88■□□□□ 0.935e-20■■■■■ 85.2
SMC4-204ENST00000462787 NIP7Q9Y221 180 aaKnown RBP eCLIP17.31■□□□□ 0.361e-7■■■■■ 83.2
SMC4-204ENST00000462787 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.22■□□□□ 0.193e-18■■■■■ 78.4
SMC4-204ENST00000462787 NCBP2P52298 156 aaKnown RBP eCLIP15.24■□□□□ 0.032e-17■■■■■ 76.5
SMC4-204ENST00000462787 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.13■□□□□ 0.332e-9■■■■■ 75.2
SMC4-204ENST00000462787 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.31■□□□□ 0.683e-9■■■■■ 72.1
SMC4-204ENST00000462787 AQRO60306 1485 aaKnown RBP eCLIP18.88■□□□□ 0.614e-8■■■■■ 71.8
SMC4-204ENST00000462787 HNRNPUQ00839 825 aaKnown RBP eCLIP21.68■■□□□ 1.062e-22■■■■■ 68.1
SMC4-204ENST00000462787 SMNDC1O75940 238 aaKnown RBP eCLIP16.35■□□□□ 0.212e-16■■■■■ 67.6
SMC4-204ENST00000462787 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.4□□□□□ -0.16e-15■■■■■ 66.6
SMC4-204ENST00000462787 RBM22Q9NW64 420 aaKnown RBP eCLIP16.01■□□□□ 0.155e-24■■■■■ 66.5
SMC4-204ENST00000462787 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.53■□□□□ 0.081e-13■■■■■ 65.9
SMC4-204ENST00000462787 TROVE2P10155 538 aaKnown RBP eCLIP17.45■□□□□ 0.381e-12■■■■■ 61.2
SMC4-204ENST00000462787 EIF3GO75821 320 aaKnown RBP eCLIP14.17□□□□□ -0.148e-13■■■■■ 59.2
SMC4-204ENST00000462787 PPIGQ13427 754 aaKnown RBP eCLIP15.32■□□□□ 0.042e-7■■■■■ 57.4
SMC4-204ENST00000462787 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.5■□□□□ 0.232e-13■■■■■ 56.3
SMC4-204ENST00000462787 EIF3DO15371 548 aaKnown RBP eCLIP16.65■□□□□ 0.262e-16■■■■■ 56.2
SMC4-204ENST00000462787 SSBP05455 408 aaKnown RBP eCLIP18.05■□□□□ 0.489e-17■■■■■ 55.5
SMC4-204ENST00000462787 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.06■□□□□ 02e-6■■■■■ 54.3
SMC4-204ENST00000462787 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.53■□□□□ 0.41e-8■■■■■ 54.3
SMC4-204ENST00000462787 RBFOX2O43251 390 aaKnown RBP eCLIP13.33□□□□□ -0.283e-8■■■■■ 54.1
SMC4-204ENST00000462787 GRSF1Q12849 480 aaKnown RBP eCLIP15.33■□□□□ 0.042e-14■■■■■ 48.8
SMC4-204ENST00000462787 HNRNPLP14866 589 aaKnown RBP eCLIP15.95■□□□□ 0.142e-15■■■■■ 47.4
SMC4-204ENST00000462787 U2AF1Q01081 240 aaKnown RBP eCLIP19.72■□□□□ 0.755e-12■■■■■ 47.2
SMC4-204ENST00000462787 HNRNPKP61978 463 aaKnown RBP eCLIP14.42□□□□□ -0.15e-13■■■■■ 46
SMC4-204ENST00000462787 ILF3Q12906 894 aaKnown RBP eCLIP14.94□□□□□ -0.028e-14■■■■■ 40.3
SMC4-204ENST00000462787 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.2■□□□□ 0.027e-12■■■■■ 38.5
SMC4-204ENST00000462787 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.9□□□□□ -0.517e-7■■■■■ 37.4
SMC4-204ENST00000462787 FXR2P51116 673 aaKnown RBP eCLIP16.69■□□□□ 0.262e-10■■■■■ 37.2
SMC4-204ENST00000462787 U2AF2P26368 475 aaKnown RBP eCLIP18.33■□□□□ 0.536e-7■■■■■ 34.1
SMC4-204ENST00000462787 SUB1P53999 127 aaKnown RBP eCLIP14□□□□□ -0.175e-10■■■■■ 33.9
SMC4-204ENST00000462787 SND1Q7KZF4 910 aaKnown RBP eCLIP17.81■□□□□ 0.446e-9■■■■■ 32.8
SMC4-204ENST00000462787 KHSRPQ92945 711 aaKnown RBP eCLIP14.92□□□□□ -0.024e-7■■■■■ 32.8
SMC4-204ENST00000462787 NOLC1Q14978 699 aaKnown RBP eCLIP18.71■□□□□ 0.594e-16■■■■■ 30.2
SMC4-204ENST00000462787 NIPBLQ6KC79 2804 aaeCLIP8.56□□□□□ -1.042e-6■■■■■ 27.8
SMC4-204ENST00000462787 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.4■□□□□ 0.222e-7■■■■□ 26.2
SMC4-204ENST00000462787 UPF1Q92900 1129 aaKnown RBP eCLIP15.21■□□□□ 0.031e-11■■■■□ 26.2
SMC4-204ENST00000462787 TAF15Q92804 592 aaKnown RBP eCLIP13.78□□□□□ -0.27e-26■■■■□ 25.9
SMC4-204ENST00000462787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.4■□□□□ 0.862e-7■■■■□ 25.5
SMC4-204ENST00000462787 LARP4Q71RC2 724 aaKnown RBP eCLIP15.31■□□□□ 0.041e-17■■■■□ 24.2
SMC4-204ENST00000462787 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.22■□□□□ 0.356e-8■■■■□ 23.9
SMC4-204ENST00000462787 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.16■□□□□ 0.345e-7■■■■□ 23.7
SMC4-204ENST00000462787 SF3B4Q15427 424 aaKnown RBP eCLIP15.23■□□□□ 0.035e-8■■■■□ 22.8
SMC4-204ENST00000462787 TARDBPQ13148 414 aaKnown RBP eCLIP15.46■□□□□ 0.073e-6■■■■□ 21.4
SMC4-204ENST00000462787 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.06■□□□□ 0.327e-7■■■■□ 21.2
SMC4-204ENST00000462787 PCBP1Q15365 356 aaKnown RBP eCLIP15.68■□□□□ 0.13e-12■■■■□ 20.8
SMC4-204ENST00000462787 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.2■□□□□ 0.52e-10■■■□□ 18.8
SMC4-204ENST00000462787 TIA1P31483 386 aaKnown RBP eCLIP15.18■□□□□ 0.022e-7■■■□□ 18.7
SMC4-204ENST00000462787 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.28■□□□□ 0.27e-6■■■□□ 17.7
SMC4-204ENST00000462787 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.14■□□□□ 0.341e-7■■■□□ 17.3
SMC4-204ENST00000462787 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.4■□□□□ 0.545e-8■■■□□ 16.4
SMC4-204ENST00000462787 CPSF6Q16630 551 aaKnown RBP eCLIP15.69■□□□□ 0.14e-6■■■□□ 15.6
SMC4-204ENST00000462787 TRA2AQ13595 282 aaKnown RBP eCLIP13.6□□□□□ -0.235e-7■■□□□ 14
SMC4-204ENST00000462787 SRSF1Q07955 248 aaKnown RBP eCLIP13.07□□□□□ -0.329e-8■■□□□ 13.7
SMC4-204ENST00000462787 EFTUD2Q15029 972 aaKnown RBP eCLIP16.71■□□□□ 0.271e-7■■□□□ 13.4
SMC4-204ENST00000462787 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.82■□□□□ 0.123e-7■■□□□ 12.9
SMC4-204ENST00000462787 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.01■□□□□ 0.477e-7■■□□□ 12.7
SMC4-204ENST00000462787 MATR3P43243 847 aaKnown RBP eCLIP18.08■□□□□ 0.487e-8■■□□□ 11.8
SMC4-204ENST00000462787 ZNF622Q969S3 477 aaKnown RBP eCLIP17.61■□□□□ 0.415e-8■■□□□ 11.5
SMC4-204ENST00000462787 SAFBQ15424 915 aaKnown RBP eCLIP18.78■□□□□ 0.62e-9■■□□□ 11.5
SMC4-204ENST00000462787 EIF3HO15372 352 aaKnown RBP eCLIP17.29■□□□□ 0.368e-6■□□□□ 10.6
SMC4-204ENST00000462787 FMR1Q06787 632 aaKnown RBP eCLIP17.12■□□□□ 0.333e-7■□□□□ 10
SMC4-204ENST00000462787 GPKOWQ92917 476 aaPredicted RBP eCLIP17.2■□□□□ 0.342e-13■□□□□ 9.3
SMC4-204ENST00000462787 HNRNPMP52272 730 aaKnown RBP eCLIP19.36■□□□□ 0.692e-9■□□□□ 8.7
Retrieved 97 of 97 RNA–protein pairs in 87.8 ms