RNA: ENST00000415380.6

SCARB1-203, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2 BASIC

Gene SCARB1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-203ENST00000415380 SMNDC1O75940 238 aaKnown RBP eCLIP18.93■□□□□ 0.626e-24■■■■■ 32.4
SCARB1-203ENST00000415380 PABPC4Q13310 644 aaKnown RBP eCLIP19.67■□□□□ 0.746e-20■□□□□ 9.8
SCARB1-203ENST00000415380 DDX6P26196 483 aaKnown RBP eCLIP16.93■□□□□ 0.35e-18■■□□□ 12.4
SCARB1-203ENST00000415380 RBM22Q9NW64 420 aaKnown RBP eCLIP18.11■□□□□ 0.492e-16■■■■■ 75.9
SCARB1-203ENST00000415380 U2AF1Q01081 240 aaKnown RBP eCLIP23.01■■□□□ 1.273e-14■■□□□ 13.6
SCARB1-203ENST00000415380 U2AF2P26368 475 aaKnown RBP eCLIP21.09■□□□□ 0.973e-14■■■■□ 21.3
SCARB1-203ENST00000415380 SF3B4Q15427 424 aaKnown RBP eCLIP17.3■□□□□ 0.362e-13■■■■■ 41.4
SCARB1-203ENST00000415380 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.21■□□□□ 0.352e-11■■■■□ 19.5
SCARB1-203ENST00000415380 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.71■■□□□ 1.713e-11■■■□□ 17
SCARB1-203ENST00000415380 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.71■□□□□ 0.751e-10■■■■■ 60.3
SCARB1-203ENST00000415380 PUM1Q14671 1186 aaKnown RBP eCLIP17.19■□□□□ 0.343e-10■□□□□ 8.1
SCARB1-203ENST00000415380 SND1Q7KZF4 910 aaKnown RBP eCLIP19.99■□□□□ 0.799e-10■■■■□ 25.5
SCARB1-203ENST00000415380 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.63■□□□□ 0.411e-9■■■■□ 21
SCARB1-203ENST00000415380 EIF4G2P78344 907 aaKnown RBP eCLIP25.05■■□□□ 1.62e-9■■■■□ 23.9
SCARB1-203ENST00000415380 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.69■□□□□ 0.263e-9■□□□□ 10.9
SCARB1-203ENST00000415380 HNRNPMP52272 730 aaKnown RBP eCLIP24.24■■□□□ 1.475e-9■■■■□ 25.7
SCARB1-203ENST00000415380 NOLC1Q14978 699 aaKnown RBP eCLIP21.51■■□□□ 1.035e-9■■■■■ 28.5
SCARB1-203ENST00000415380 PPIGQ13427 754 aaKnown RBP eCLIP17.36■□□□□ 0.377e-9■□□□□ 11
SCARB1-203ENST00000415380 LARP4Q71RC2 724 aaKnown RBP eCLIP18.09■□□□□ 0.498e-9■□□□□ 10.2
SCARB1-203ENST00000415380 DDX42Q86XP3 938 aaKnown RBP eCLIP19.69■□□□□ 0.748e-9■□□□□ 10.6
SCARB1-203ENST00000415380 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.8■□□□□ 0.921e-8■■■■□ 21.3
SCARB1-203ENST00000415380 AKAP1Q92667 903 aaKnown RBP eCLIP16.83■□□□□ 0.281e-8■■■■■ 31.5
SCARB1-203ENST00000415380 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.19■□□□□ 0.342e-8■□□□□ 10.3
SCARB1-203ENST00000415380 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.59■■□□□ 1.212e-8■□□□□ 8.6
SCARB1-203ENST00000415380 IGF2BP3O00425 579 aaKnown RBP eCLIP19.19■□□□□ 0.663e-8■■■□□ 18.8
SCARB1-203ENST00000415380 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.67■□□□□ 0.743e-8■■■□□ 15.6
SCARB1-203ENST00000415380 DDX3XO00571 662 aaKnown RBP eCLIP19.64■□□□□ 0.733e-8■■■■□ 23.3
SCARB1-203ENST00000415380 UPF1Q92900 1129 aaKnown RBP eCLIP17.43■□□□□ 0.383e-8■■■■■ 40.7
SCARB1-203ENST00000415380 RBFOX2O43251 390 aaKnown RBP eCLIP14.95□□□□□ -0.023e-8■■■■■ 62.6
SCARB1-203ENST00000415380 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.01■□□□□ 0.313e-8■□□□□ 8.6
SCARB1-203ENST00000415380 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.75■□□□□ 0.593e-8■□□□□ 10.2
SCARB1-203ENST00000415380 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.92■□□□□ 0.464e-8■□□□□ 10.2
SCARB1-203ENST00000415380 PCBP2Q15366 365 aaKnown RBP eCLIP17.71■□□□□ 0.435e-8■■□□□ 11.8
SCARB1-203ENST00000415380 AATFQ9NY61 560 aaKnown RBP eCLIP20.51■□□□□ 0.876e-8■■■□□ 16.7
SCARB1-203ENST00000415380 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.79■□□□□ 0.68e-8■□□□□ 9.4
SCARB1-203ENST00000415380 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.35■□□□□ 0.691e-7■■□□□ 13.5
SCARB1-203ENST00000415380 HNRNPLP14866 589 aaKnown RBP eCLIP18.21■□□□□ 0.51e-7■■■■□ 21.9
SCARB1-203ENST00000415380 DKC1O60832 514 aaKnown RBP eCLIP18.98■□□□□ 0.631e-7■■■■□ 19.3
SCARB1-203ENST00000415380 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.3■□□□□ 0.841e-7■■■■□ 24.4
SCARB1-203ENST00000415380 PCBP1Q15365 356 aaKnown RBP eCLIP18.19■□□□□ 0.51e-7■■■□□ 18.8
SCARB1-203ENST00000415380 ZNF622Q969S3 477 aaKnown RBP eCLIP19.26■□□□□ 0.671e-7■□□□□ 9.5
SCARB1-203ENST00000415380 NCBP2P52298 156 aaKnown RBP eCLIP16.94■□□□□ 0.31e-7■□□□□ 9.7
SCARB1-203ENST00000415380 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.15■□□□□ 0.661e-7■□□□□ 8.9
SCARB1-203ENST00000415380 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.29■□□□□ 0.681e-7■■■■■ 49.3
SCARB1-203ENST00000415380 EIF3DO15371 548 aaKnown RBP eCLIP19.53■□□□□ 0.721e-7■□□□□ 8.6
SCARB1-203ENST00000415380 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.91■■□□□ 1.422e-7■■■■□ 22.7
SCARB1-203ENST00000415380 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.91■□□□□ 0.943e-7■□□□□ 9.2
SCARB1-203ENST00000415380 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.19□□□□□ -0.33e-7■■■□□ 14.7
SCARB1-203ENST00000415380 RPS3P23396 243 aaKnown RBP eCLIP17.58■□□□□ 0.414e-7■■■■□ 20.6
SCARB1-203ENST00000415380 RBM15Q96T37 977 aaKnown RBP eCLIP19.12■□□□□ 0.654e-7■■■□□ 17.1
SCARB1-203ENST00000415380 ILF3Q12906 894 aaKnown RBP eCLIP16.48■□□□□ 0.234e-7■■■■■ 41.2
SCARB1-203ENST00000415380 EFTUD2Q15029 972 aaKnown RBP eCLIP18.96■□□□□ 0.634e-7■■■■□ 26.1
SCARB1-203ENST00000415380 GTF2F1P35269 517 aaKnown RBP eCLIP21.4■■□□□ 1.025e-7■■■□□ 18.9
SCARB1-203ENST00000415380 NKRFO15226 690 aaKnown RBP eCLIP20.1■□□□□ 0.815e-7■□□□□ 9.1
SCARB1-203ENST00000415380 PTBP1P26599 531 aaKnown RBP eCLIP16.89■□□□□ 0.295e-7■■■■■ 52.1
SCARB1-203ENST00000415380 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.36■□□□□ 0.375e-7■■■■□ 22.8
SCARB1-203ENST00000415380 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.98■□□□□ 0.476e-7■■■■□ 24.2
SCARB1-203ENST00000415380 PRPF4O43172 522 aaKnown RBP eCLIP19.06■□□□□ 0.646e-7■■□□□ 12.4
SCARB1-203ENST00000415380 AGGF1Q8N302 714 aaeCLIP19.01■□□□□ 0.637e-7■■■■■ 27.5
SCARB1-203ENST00000415380 AQRO60306 1485 aaKnown RBP eCLIP25.71■■□□□ 1.717e-7■■■■■ 33.9
SCARB1-203ENST00000415380 EWSR1Q01844 656 aaKnown RBP eCLIP15.59■□□□□ 0.098e-7■■■□□ 16.1
SCARB1-203ENST00000415380 MATR3P43243 847 aaKnown RBP eCLIP19.98■□□□□ 0.798e-7■■□□□ 13.5
SCARB1-203ENST00000415380 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.76■□□□□ 0.598e-7■■□□□ 12.1
SCARB1-203ENST00000415380 YBX3P16989 372 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■□□□□ 8
SCARB1-203ENST00000415380 HNRNPKP61978 463 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■■■□ 22.7
SCARB1-203ENST00000415380 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.77■□□□□ 0.921e-6■■■□□ 17.3
SCARB1-203ENST00000415380 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.36■□□□□ 0.691e-6■■■■■ 77.2
SCARB1-203ENST00000415380 SF3B1O75533 1304 aaKnown RBP eCLIP18.48■□□□□ 0.551e-6■■■■■ 69.2
SCARB1-203ENST00000415380 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.45■□□□□ 0.71e-6■■■■■ 29.1
SCARB1-203ENST00000415380 TAF15Q92804 592 aaKnown RBP eCLIP15.23■□□□□ 0.032e-6■■■□□ 15
SCARB1-203ENST00000415380 SAFBQ15424 915 aaKnown RBP eCLIP20.63■□□□□ 0.892e-6■■□□□ 11.8
SCARB1-203ENST00000415380 HNRNPUQ00839 825 aaKnown RBP eCLIP25.08■■□□□ 1.612e-6■□□□□ 11
SCARB1-203ENST00000415380 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.66■■□□□ 1.062e-6■■□□□ 13.2
SCARB1-203ENST00000415380 SF3A3Q12874 501 aaKnown RBP eCLIP19.38■□□□□ 0.692e-6■■■□□ 17.8
SCARB1-203ENST00000415380 SRSF1Q07955 248 aaKnown RBP eCLIP13.75□□□□□ -0.212e-6■■□□□ 11.8
SCARB1-203ENST00000415380 CDC40O60508 579 aaKnown RBP eCLIP16.28■□□□□ 0.22e-6■□□□□ 8.5
SCARB1-203ENST00000415380 NONOQ15233 471 aaKnown RBP eCLIP20.05■□□□□ 0.82e-6■■■□□ 17.2
SCARB1-203ENST00000415380 TARDBPQ13148 414 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■■■■■ 38.5
SCARB1-203ENST00000415380 SFPQP23246 707 aaKnown RBP eCLIP20.87■□□□□ 0.932e-6■■□□□ 12.9
SCARB1-203ENST00000415380 FUSP35637 526 aaKnown RBP eCLIP11.61□□□□□ -0.553e-6■■□□□ 13.4
SCARB1-203ENST00000415380 SRSF7Q16629 238 aaKnown RBP eCLIP15.44■□□□□ 0.063e-6■■■■□ 20.4
SCARB1-203ENST00000415380 AARSP49588 968 aaKnown RBP eCLIP20.13■□□□□ 0.814e-6■■■■■ 30.6
SCARB1-203ENST00000415380 SUB1P53999 127 aaKnown RBP eCLIP14.5□□□□□ -0.094e-6■■■■■ 28.5
SCARB1-203ENST00000415380 ZC3H11AO75152 810 aaKnown RBP eCLIP19.12■□□□□ 0.655e-6■■□□□ 11.9
SCARB1-203ENST00000415380 ZRANB2O95218 330 aaKnown RBP eCLIP20.63■□□□□ 0.898e-6■■■□□ 17.5
SCARB1-203ENST00000415380 WDR43Q15061 677 aaKnown RBP eCLIP23.68■■□□□ 1.388e-6■■□□□ 11.7
SCARB1-203ENST00000415380 EIF3HO15372 352 aaKnown RBP eCLIP19.88■□□□□ 0.771e-5■□□□□ 9.1
Retrieved 87 of 87 RNA–protein pairs in 32.2 ms