RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.88□□□□□ -0.675e-24■■■■■ 156.6
CUX1-203ENST00000360264 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.71□□□□□ -0.538e-7■■■■■ 154.8
CUX1-203ENST00000360264 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.57□□□□□ -0.886e-7■■■■■ 139.2
CUX1-203ENST00000360264 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.23□□□□□ -0.773e-7■■■■■ 94
CUX1-203ENST00000360264 NIPBLQ6KC79 2804 aaeCLIP6.56□□□□□ -1.363e-10■■■■■ 76.4
CUX1-203ENST00000360264 NIP7Q9Y221 180 aaKnown RBP eCLIP10.87□□□□□ -0.672e-10■■■■■ 60.1
CUX1-203ENST00000360264 SF3B1O75533 1304 aaKnown RBP eCLIP10.01□□□□□ -0.814e-6■■■■■ 58.5
CUX1-203ENST00000360264 AGGF1Q8N302 714 aaeCLIP10.11□□□□□ -0.792e-7■■■■■ 57.8
CUX1-203ENST00000360264 WRNQ14191 1432 aaPredicted RBP eCLIP12.22□□□□□ -0.452e-6■■■■■ 54.1
CUX1-203ENST00000360264 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.66□□□□□ -0.76e-7■■■■■ 53.4
CUX1-203ENST00000360264 AARSP49588 968 aaKnown RBP eCLIP10.33□□□□□ -0.762e-6■■■■■ 51.2
CUX1-203ENST00000360264 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.07□□□□□ -0.86e-12■■■■■ 49.8
CUX1-203ENST00000360264 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.63□□□□□ -0.716e-7■■■■■ 48.9
CUX1-203ENST00000360264 RPS11P62280 158 aaKnown RBP eCLIP8.31□□□□□ -1.086e-6■■■■■ 44.3
CUX1-203ENST00000360264 PTBP1P26599 531 aaKnown RBP eCLIP8.92□□□□□ -0.984e-11■■■■■ 42.8
CUX1-203ENST00000360264 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.79□□□□□ -0.844e-7■■■■■ 40.8
CUX1-203ENST00000360264 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.32□□□□□ -0.926e-6■■■■■ 38.3
CUX1-203ENST00000360264 PCBP1Q15365 356 aaKnown RBP eCLIP9.93□□□□□ -0.826e-6■■■■■ 34.5
CUX1-203ENST00000360264 DKC1O60832 514 aaKnown RBP eCLIP10.92□□□□□ -0.661e-7■■■■■ 34.5
CUX1-203ENST00000360264 PCBP2Q15366 365 aaKnown RBP eCLIP9.22□□□□□ -0.931e-6■■■■■ 33.2
CUX1-203ENST00000360264 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.66□□□□□ -0.868e-7■■■■■ 33
CUX1-203ENST00000360264 EIF4G2P78344 907 aaKnown RBP eCLIP12.6□□□□□ -0.391e-6■■■■■ 32.2
CUX1-203ENST00000360264 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.02□□□□□ -0.817e-8■■■■■ 32
CUX1-203ENST00000360264 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.61□□□□□ -0.871e-6■■■■■ 31.5
CUX1-203ENST00000360264 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.02□□□□□ -0.972e-6■■■■■ 29.2
CUX1-203ENST00000360264 HNRNPLP14866 589 aaKnown RBP eCLIP9.58□□□□□ -0.886e-8■■■■■ 28.9
CUX1-203ENST00000360264 SRSF7Q16629 238 aaKnown RBP eCLIP8.13□□□□□ -1.111e-8■■■■■ 28.4
CUX1-203ENST00000360264 U2AF2P26368 475 aaKnown RBP eCLIP10.44□□□□□ -0.741e-7■■■■■ 27.9
CUX1-203ENST00000360264 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.17□□□□□ -0.623e-7■■■■■ 27.8
CUX1-203ENST00000360264 AATFQ9NY61 560 aaKnown RBP eCLIP10.65□□□□□ -0.71e-6■■■■■ 27.8
CUX1-203ENST00000360264 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.55□□□□□ -0.883e-7■■■■■ 26.8
CUX1-203ENST00000360264 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.97□□□□□ -0.971e-8■■■■□ 26.3
CUX1-203ENST00000360264 AQRO60306 1485 aaKnown RBP eCLIP11.18□□□□□ -0.624e-7■■■■□ 26.1
CUX1-203ENST00000360264 TARDBPQ13148 414 aaKnown RBP eCLIP9.51□□□□□ -0.899e-7■■■■□ 26.1
CUX1-203ENST00000360264 ZC3H11AO75152 810 aaKnown RBP eCLIP10.01□□□□□ -0.813e-6■■■■□ 25.7
CUX1-203ENST00000360264 METAP2P50579 478 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■■■□ 24.7
CUX1-203ENST00000360264 HNRNPKP61978 463 aaKnown RBP eCLIP9.33□□□□□ -0.921e-6■■■■□ 24.1
CUX1-203ENST00000360264 FUSP35637 526 aaKnown RBP eCLIP7.75□□□□□ -1.175e-7■■■■□ 23.7
CUX1-203ENST00000360264 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.68□□□□□ -0.862e-10■■■■□ 23.5
CUX1-203ENST00000360264 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.78□□□□□ -0.841e-6■■■■□ 23.3
CUX1-203ENST00000360264 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.14□□□□□ -0.634e-6■■■■□ 23.2
CUX1-203ENST00000360264 MATR3P43243 847 aaKnown RBP eCLIP11.38□□□□□ -0.595e-7■■■■□ 22.9
CUX1-203ENST00000360264 QKIQ96PU8 341 aaKnown RBP eCLIP9.82□□□□□ -0.846e-15■■■■□ 22.1
CUX1-203ENST00000360264 HNRNPUQ00839 825 aaKnown RBP eCLIP12.78□□□□□ -0.361e-6■■■■□ 21.8
CUX1-203ENST00000360264 ILF3Q12906 894 aaKnown RBP eCLIP9.63□□□□□ -0.874e-7■■■■□ 21.7
CUX1-203ENST00000360264 LARP4Q71RC2 724 aaKnown RBP eCLIP9.19□□□□□ -0.949e-6■■■■□ 21.5
CUX1-203ENST00000360264 AKAP1Q92667 903 aaKnown RBP eCLIP9.58□□□□□ -0.881e-6■■■■□ 21.5
CUX1-203ENST00000360264 TIA1P31483 386 aaKnown RBP eCLIP9.29□□□□□ -0.921e-6■■■■□ 21
CUX1-203ENST00000360264 EFTUD2Q15029 972 aaKnown RBP eCLIP10.27□□□□□ -0.768e-8■■■■□ 20.9
CUX1-203ENST00000360264 SF3B4Q15427 424 aaKnown RBP eCLIP9.45□□□□□ -0.95e-6■■■■□ 20.8
CUX1-203ENST00000360264 SFPQP23246 707 aaKnown RBP eCLIP11.26□□□□□ -0.611e-6■■■■□ 20.4
CUX1-203ENST00000360264 RBM15Q96T37 977 aaKnown RBP eCLIP10.07□□□□□ -0.81e-11■■■■□ 20.4
CUX1-203ENST00000360264 RPS3P23396 243 aaKnown RBP eCLIP9.23□□□□□ -0.931e-7■■■■□ 20.3
CUX1-203ENST00000360264 KHSRPQ92945 711 aaKnown RBP eCLIP8.98□□□□□ -0.973e-7■■■■□ 19.9
CUX1-203ENST00000360264 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.03□□□□□ -0.83e-6■■■■□ 19.4
CUX1-203ENST00000360264 HNRNPMP52272 730 aaKnown RBP eCLIP11.67□□□□□ -0.549e-7■■■□□ 19.2
CUX1-203ENST00000360264 YBX3P16989 372 aaKnown RBP eCLIP9.77□□□□□ -0.855e-6■■■□□ 19.1
CUX1-203ENST00000360264 RBM5P52756 815 aaKnown RBP eCLIP11.38□□□□□ -0.594e-7■■■□□ 19.1
CUX1-203ENST00000360264 GTF2F1P35269 517 aaKnown RBP eCLIP10.87□□□□□ -0.672e-8■■■□□ 18.7
CUX1-203ENST00000360264 NONOQ15233 471 aaKnown RBP eCLIP10.67□□□□□ -0.71e-6■■■□□ 18.5
CUX1-203ENST00000360264 RBFOX2O43251 390 aaKnown RBP eCLIP8.4□□□□□ -1.066e-7■■■□□ 18.3
CUX1-203ENST00000360264 PPIGQ13427 754 aaKnown RBP eCLIP9.6□□□□□ -0.878e-7■■■□□ 18.1
CUX1-203ENST00000360264 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.8□□□□□ -0.843e-7■■■□□ 17.9
CUX1-203ENST00000360264 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.09□□□□□ -0.794e-7■■■□□ 17.6
CUX1-203ENST00000360264 LSM11P83369 360 aaKnown RBP eCLIP8.64□□□□□ -1.035e-6■■■□□ 16.8
CUX1-203ENST00000360264 DDX6P26196 483 aaKnown RBP eCLIP9.63□□□□□ -0.879e-7■■■□□ 16.7
CUX1-203ENST00000360264 EIF3HO15372 352 aaKnown RBP eCLIP9.99□□□□□ -0.811e-7■■■□□ 16.5
CUX1-203ENST00000360264 NKRFO15226 690 aaKnown RBP eCLIP9.98□□□□□ -0.816e-7■■■□□ 16.5
CUX1-203ENST00000360264 EWSR1Q01844 656 aaKnown RBP eCLIP8.39□□□□□ -1.072e-6■■■□□ 16.3
CUX1-203ENST00000360264 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.59□□□□□ -0.557e-7■■■□□ 15.6
CUX1-203ENST00000360264 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.21□□□□□ -0.771e-6■■■□□ 15.3
CUX1-203ENST00000360264 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.16□□□□□ -0.944e-7■■■□□ 15
CUX1-203ENST00000360264 PUM1Q14671 1186 aaKnown RBP eCLIP9.45□□□□□ -0.95e-7■■■□□ 14.6
CUX1-203ENST00000360264 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.41□□□□□ -0.99e-7■■□□□ 14.3
CUX1-203ENST00000360264 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.371e-6■■□□□ 13.7
CUX1-203ENST00000360264 HNRNPCP07910 306 aaKnown RBP eCLIP10.02□□□□□ -0.817e-7■■□□□ 13.7
CUX1-203ENST00000360264 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.96□□□□□ -0.983e-6■■□□□ 13.5
CUX1-203ENST00000360264 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.04□□□□□ -0.642e-6■■□□□ 13.4
CUX1-203ENST00000360264 DDX3XO00571 662 aaKnown RBP eCLIP9.67□□□□□ -0.861e-8■■□□□ 13.3
CUX1-203ENST00000360264 ZNF622Q969S3 477 aaKnown RBP eCLIP10.96□□□□□ -0.661e-7■■□□□ 13.1
CUX1-203ENST00000360264 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.49□□□□□ -0.737e-7■■□□□ 13.1
CUX1-203ENST00000360264 NCBP2P52298 156 aaKnown RBP eCLIP9.53□□□□□ -0.882e-6■■□□□ 13
CUX1-203ENST00000360264 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.12□□□□□ -0.638e-7■■□□□ 12.7
CUX1-203ENST00000360264 NOLC1Q14978 699 aaKnown RBP eCLIP10.75□□□□□ -0.693e-6■■□□□ 12.3
CUX1-203ENST00000360264 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.52□□□□□ -0.731e-9■■□□□ 12.2
CUX1-203ENST00000360264 SMNDC1O75940 238 aaKnown RBP eCLIP9.75□□□□□ -0.851e-5■■□□□ 11.9
CUX1-203ENST00000360264 TROVE2P10155 538 aaKnown RBP eCLIP10.66□□□□□ -0.73e-6■■□□□ 11.8
CUX1-203ENST00000360264 PRPF4O43172 522 aaKnown RBP eCLIP10.22□□□□□ -0.773e-6■■□□□ 11.6
CUX1-203ENST00000360264 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.99□□□□□ -0.974e-6■■□□□ 11.4
CUX1-203ENST00000360264 U2AF1Q01081 240 aaKnown RBP eCLIP12.06□□□□□ -0.485e-6■□□□□ 11.2
CUX1-203ENST00000360264 DDX21Q9NR30 783 aaKnown RBP eCLIP10.69□□□□□ -0.71e-7■□□□□ 10.9
CUX1-203ENST00000360264 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.78□□□□□ -0.523e-6■□□□□ 10.3
CUX1-203ENST00000360264 GPKOWQ92917 476 aaPredicted RBP eCLIP10.42□□□□□ -0.747e-6■□□□□ 10
CUX1-203ENST00000360264 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.15□□□□□ -0.637e-6■□□□□ 9.2
CUX1-203ENST00000360264 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.98□□□□□ -0.813e-6■□□□□ 8.8
Retrieved 95 of 95 RNA–protein pairs in 53.9 ms