RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.79□□□□□ -0.361e-147■■■■■ 345.5
SMC4-202ENST00000357388 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.96□□□□□ -0.332e-144■■■■■ 553.7
SMC4-202ENST00000357388 YWHAGP61981 247 aaKnown RBP eCLIP13.96□□□□□ -0.171e-117■■■■■ 400.8
SMC4-202ENST00000357388 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.58□□□□□ -0.084e-98■■■■■ 943.1
SMC4-202ENST00000357388 LSM11P83369 360 aaKnown RBP eCLIP11.5□□□□□ -0.577e-97■■■■■ 245.7
SMC4-202ENST00000357388 AGGF1Q8N302 714 aaeCLIP13.74□□□□□ -0.212e-85■■■■■ 286.7
SMC4-202ENST00000357388 DDX3XO00571 662 aaKnown RBP eCLIP12.95□□□□□ -0.344e-78■■■■■ 527.9
SMC4-202ENST00000357388 RBM15Q96T37 977 aaKnown RBP eCLIP13.46□□□□□ -0.255e-67■■■■■ 212.6
SMC4-202ENST00000357388 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.54■□□□□ 0.086e-65■■■■■ 143.5
SMC4-202ENST00000357388 RPS3P23396 243 aaKnown RBP eCLIP12.61□□□□□ -0.397e-64■■■■■ 337.8
SMC4-202ENST00000357388 AARSP49588 968 aaKnown RBP eCLIP13.77□□□□□ -0.213e-49■■■■■ 252.4
SMC4-202ENST00000357388 GTF2F1P35269 517 aaKnown RBP eCLIP14.98□□□□□ -0.018e-49■■■■■ 172.1
SMC4-202ENST00000357388 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.43□□□□□ -0.15e-47■■■■■ 274.1
SMC4-202ENST00000357388 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.89□□□□□ -0.037e-44■■■■■ 137.4
SMC4-202ENST00000357388 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.48□□□□□ -0.412e-41■■■■■ 207.1
SMC4-202ENST00000357388 G3BP1Q13283 466 aaKnown RBP eCLIP15.38■□□□□ 0.051e-39■■■■■ 140
SMC4-202ENST00000357388 HLTFQ14527 1009 aaKnown RBP eCLIP14.84□□□□□ -0.035e-35■■■■■ 127.1
SMC4-202ENST00000357388 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.94□□□□□ -0.184e-34■■■■■ 131.8
SMC4-202ENST00000357388 DDX21Q9NR30 783 aaKnown RBP eCLIP14.31□□□□□ -0.121e-26■■■■■ 198.7
SMC4-202ENST00000357388 TAF15Q92804 592 aaKnown RBP eCLIP11.19□□□□□ -0.627e-26■■■■□ 25.9
SMC4-202ENST00000357388 AKAP1Q92667 903 aaKnown RBP eCLIP12.84□□□□□ -0.354e-24■■■■■ 140.6
SMC4-202ENST00000357388 RBM22Q9NW64 420 aaKnown RBP eCLIP12.96□□□□□ -0.335e-24■■■■■ 66.5
SMC4-202ENST00000357388 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.342e-22■■■■■ 68.1
SMC4-202ENST00000357388 WDR43Q15061 677 aaKnown RBP eCLIP16.93■□□□□ 0.35e-20■■■■■ 85.2
SMC4-202ENST00000357388 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.15□□□□□ -0.33e-18■■■■■ 78.4
SMC4-202ENST00000357388 LARP4Q71RC2 724 aaKnown RBP eCLIP12.05□□□□□ -0.481e-17■■■■□ 24.2
SMC4-202ENST00000357388 NCBP2P52298 156 aaKnown RBP eCLIP12.48□□□□□ -0.412e-17■■■■■ 76.5
SMC4-202ENST00000357388 RPS11P62280 158 aaKnown RBP eCLIP11.19□□□□□ -0.628e-17■■■■■ 578.9
SMC4-202ENST00000357388 SSBP05455 408 aaKnown RBP eCLIP14.86□□□□□ -0.039e-17■■■■■ 55.5
SMC4-202ENST00000357388 EIF3DO15371 548 aaKnown RBP eCLIP13.77□□□□□ -0.22e-16■■■■■ 56.2
SMC4-202ENST00000357388 SMNDC1O75940 238 aaKnown RBP eCLIP13.22□□□□□ -0.292e-16■■■■■ 67.6
SMC4-202ENST00000357388 NOLC1Q14978 699 aaKnown RBP eCLIP14.76□□□□□ -0.054e-16■■■■■ 30.2
SMC4-202ENST00000357388 HNRNPLP14866 589 aaKnown RBP eCLIP12.75□□□□□ -0.372e-15■■■■■ 47.4
SMC4-202ENST00000357388 GRSF1Q12849 480 aaKnown RBP eCLIP12.8□□□□□ -0.362e-14■■■■■ 48.8
SMC4-202ENST00000357388 ILF3Q12906 894 aaKnown RBP eCLIP12.63□□□□□ -0.398e-14■■■■■ 40.3
SMC4-202ENST00000357388 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.78□□□□□ -0.361e-13■■■■■ 65.9
SMC4-202ENST00000357388 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.84□□□□□ -0.192e-13■■■■■ 56.3
SMC4-202ENST00000357388 GPKOWQ92917 476 aaPredicted RBP eCLIP13.67□□□□□ -0.222e-13■□□□□ 9.3
SMC4-202ENST00000357388 HNRNPKP61978 463 aaKnown RBP eCLIP12.19□□□□□ -0.465e-13■■■■■ 46
SMC4-202ENST00000357388 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.08□□□□□ -0.325e-13■■■■■ 220.5
SMC4-202ENST00000357388 EIF3GO75821 320 aaKnown RBP eCLIP11.29□□□□□ -0.68e-13■■■■■ 59.2
SMC4-202ENST00000357388 TROVE2P10155 538 aaKnown RBP eCLIP14.34□□□□□ -0.111e-12■■■■■ 61.2
SMC4-202ENST00000357388 YBX3P16989 372 aaKnown RBP eCLIP12.85□□□□□ -0.351e-12■■■■□ 23.5
SMC4-202ENST00000357388 PCBP1Q15365 356 aaKnown RBP eCLIP12.82□□□□□ -0.363e-12■■■■□ 20.8
SMC4-202ENST00000357388 U2AF1Q01081 240 aaKnown RBP eCLIP15.84■□□□□ 0.135e-12■■■■■ 47.2
SMC4-202ENST00000357388 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.41□□□□□ -0.427e-12■■■■■ 38.5
SMC4-202ENST00000357388 UPF1Q92900 1129 aaKnown RBP eCLIP12.55□□□□□ -0.42e-11■■■■■ 40.4
SMC4-202ENST00000357388 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.77□□□□□ -0.052e-10■■■□□ 18.8
SMC4-202ENST00000357388 FXR2P51116 673 aaKnown RBP eCLIP13.16□□□□□ -0.32e-10■■■■■ 37.2
SMC4-202ENST00000357388 SUB1P53999 127 aaKnown RBP eCLIP11.87□□□□□ -0.515e-10■■■■■ 33.9
SMC4-202ENST00000357388 HNRNPMP52272 730 aaKnown RBP eCLIP15.47■□□□□ 0.072e-9■□□□□ 8.7
SMC4-202ENST00000357388 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.67□□□□□ -0.222e-9■■■■■ 75.2
SMC4-202ENST00000357388 SAFBQ15424 915 aaKnown RBP eCLIP15.46■□□□□ 0.062e-9■■□□□ 11.5
SMC4-202ENST00000357388 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.4□□□□□ -0.13e-9■■■■■ 72.1
SMC4-202ENST00000357388 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.89□□□□□ -0.514e-9■■■■■ 118.1
SMC4-202ENST00000357388 SND1Q7KZF4 910 aaKnown RBP eCLIP14.29□□□□□ -0.126e-9■■■■■ 32.8
SMC4-202ENST00000357388 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.87□□□□□ -0.517e-9■■■■■ 49
SMC4-202ENST00000357388 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.18□□□□□ -0.141e-8■■■■■ 54.3
SMC4-202ENST00000357388 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.76□□□□□ -0.211e-8■■■■■ 268.2
SMC4-202ENST00000357388 NONOQ15233 471 aaKnown RBP eCLIP14.06□□□□□ -0.162e-8■■■■■ 98.1
SMC4-202ENST00000357388 RBFOX2O43251 390 aaKnown RBP eCLIP11.28□□□□□ -0.63e-8■■■■■ 54.1
SMC4-202ENST00000357388 AATFQ9NY61 560 aaKnown RBP eCLIP13.95□□□□□ -0.184e-8■■■■■ 116
SMC4-202ENST00000357388 AQRO60306 1485 aaKnown RBP eCLIP14.64□□□□□ -0.074e-8■■■■■ 71.8
SMC4-202ENST00000357388 SF3B4Q15427 424 aaKnown RBP eCLIP12.24□□□□□ -0.455e-8■■■■□ 22.8
SMC4-202ENST00000357388 ZNF622Q969S3 477 aaKnown RBP eCLIP14.52□□□□□ -0.085e-8■■□□□ 11.5
SMC4-202ENST00000357388 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.09■□□□□ 0.015e-8■■■□□ 16.4
SMC4-202ENST00000357388 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.7□□□□□ -0.226e-8■■■■□ 23.9
SMC4-202ENST00000357388 MATR3P43243 847 aaKnown RBP eCLIP14.88□□□□□ -0.037e-8■■□□□ 11.8
SMC4-202ENST00000357388 SRSF1Q07955 248 aaKnown RBP eCLIP10.91□□□□□ -0.669e-8■■□□□ 13.7
SMC4-202ENST00000357388 EFTUD2Q15029 972 aaKnown RBP eCLIP13.75□□□□□ -0.211e-7■■□□□ 13.4
SMC4-202ENST00000357388 SF3B1O75533 1304 aaKnown RBP eCLIP13.3□□□□□ -0.281e-7■■■■■ 165.2
SMC4-202ENST00000357388 NIP7Q9Y221 180 aaKnown RBP eCLIP14.31□□□□□ -0.121e-7■■■■■ 83.2
SMC4-202ENST00000357388 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.98□□□□□ -0.331e-7■■■□□ 17.3
SMC4-202ENST00000357388 PPIGQ13427 754 aaKnown RBP eCLIP12.65□□□□□ -0.392e-7■■■■■ 57.4
SMC4-202ENST00000357388 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.84■□□□□ 0.292e-7■■■■□ 25.5
SMC4-202ENST00000357388 TIA1P31483 386 aaKnown RBP eCLIP12.25□□□□□ -0.452e-7■■■□□ 18.7
SMC4-202ENST00000357388 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.81□□□□□ -0.363e-7■■□□□ 12.9
SMC4-202ENST00000357388 FMR1Q06787 632 aaKnown RBP eCLIP13.26□□□□□ -0.293e-7■□□□□ 10
SMC4-202ENST00000357388 SF3A3Q12874 501 aaKnown RBP eCLIP14.01□□□□□ -0.173e-7■■■■■ 122.4
SMC4-202ENST00000357388 KHSRPQ92945 711 aaKnown RBP eCLIP11.96□□□□□ -0.54e-7■■■■■ 32.8
SMC4-202ENST00000357388 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.77□□□□□ -0.215e-7■■■■□ 23.7
SMC4-202ENST00000357388 TRA2AQ13595 282 aaKnown RBP eCLIP11.49□□□□□ -0.575e-7■■□□□ 14
SMC4-202ENST00000357388 ZC3H11AO75152 810 aaKnown RBP eCLIP13.17□□□□□ -0.35e-7■■■■■ 90.5
SMC4-202ENST00000357388 U2AF2P26368 475 aaKnown RBP eCLIP14.44□□□□□ -0.16e-7■■■■■ 34.1
SMC4-202ENST00000357388 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.74□□□□□ -0.057e-7■■□□□ 12.7
SMC4-202ENST00000357388 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.82□□□□□ -0.847e-7■■■■■ 37.4
SMC4-202ENST00000357388 QKIQ96PU8 341 aaKnown RBP eCLIP13.42□□□□□ -0.267e-7■■■■■ 232.7
SMC4-202ENST00000357388 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.65□□□□□ -0.227e-7■■■■□ 21.2
SMC4-202ENST00000357388 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.22□□□□□ -0.291e-6■■■■■ 406.9
SMC4-202ENST00000357388 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.34■□□□□ 0.051e-6■■■■■ 397.5
SMC4-202ENST00000357388 NIPBLQ6KC79 2804 aaeCLIP6.3□□□□□ -1.42e-6■■■■■ 27.8
SMC4-202ENST00000357388 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.27□□□□□ -0.452e-6■■■■■ 54.3
SMC4-202ENST00000357388 PABPC4Q13310 644 aaKnown RBP eCLIP14.05□□□□□ -0.162e-6■■■■■ 455.6
SMC4-202ENST00000357388 TARDBPQ13148 414 aaKnown RBP eCLIP12.6□□□□□ -0.393e-6■■■■□ 21.4
SMC4-202ENST00000357388 CPSF6Q16630 551 aaKnown RBP eCLIP12.71□□□□□ -0.374e-6■■■□□ 15.6
SMC4-202ENST00000357388 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.2□□□□□ -0.35e-6■■■□□ 17.5
SMC4-202ENST00000357388 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.6□□□□□ -0.237e-6■■■□□ 17.7
SMC4-202ENST00000357388 EIF3HO15372 352 aaKnown RBP eCLIP13.65□□□□□ -0.228e-6■□□□□ 10.6
Retrieved 98 of 98 RNA–protein pairs in 48.9 ms