RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.7■□□□□ 0.421e-147■■■■■ 345.5
SMC4-201ENST00000344722 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.56■□□□□ 0.562e-144■■■■■ 553.7
SMC4-201ENST00000344722 YWHAGP61981 247 aaKnown RBP eCLIP19.58■□□□□ 0.731e-117■■■■■ 400.8
SMC4-201ENST00000344722 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.24■□□□□ 0.834e-98■■■■■ 943.1
SMC4-201ENST00000344722 LSM11P83369 360 aaKnown RBP eCLIP16.08■□□□□ 0.167e-97■■■■■ 245.7
SMC4-201ENST00000344722 AGGF1Q8N302 714 aaeCLIP19.45■□□□□ 0.72e-85■■■■■ 286.7
SMC4-201ENST00000344722 DDX3XO00571 662 aaKnown RBP eCLIP18.73■□□□□ 0.594e-78■■■■■ 527.9
SMC4-201ENST00000344722 RBM15Q96T37 977 aaKnown RBP eCLIP19.18■□□□□ 0.665e-67■■■■■ 212.6
SMC4-201ENST00000344722 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.84■■□□□ 1.096e-65■■■■■ 143.5
SMC4-201ENST00000344722 RPS3P23396 243 aaKnown RBP eCLIP17.74■□□□□ 0.437e-64■■■■■ 337.8
SMC4-201ENST00000344722 AARSP49588 968 aaKnown RBP eCLIP19.22■□□□□ 0.673e-49■■■■■ 252.4
SMC4-201ENST00000344722 GTF2F1P35269 517 aaKnown RBP eCLIP21.27■■□□□ 18e-49■■■■■ 172.1
SMC4-201ENST00000344722 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.1■□□□□ 0.815e-47■■■■■ 274.1
SMC4-201ENST00000344722 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.91■□□□□ 0.947e-44■■■■■ 137.4
SMC4-201ENST00000344722 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.07■□□□□ 0.322e-41■■■■■ 207.1
SMC4-201ENST00000344722 G3BP1Q13283 466 aaKnown RBP eCLIP21.62■■□□□ 1.051e-39■■■■■ 140
SMC4-201ENST00000344722 HLTFQ14527 1009 aaKnown RBP eCLIP20.79■□□□□ 0.925e-35■■■■■ 127.1
SMC4-201ENST00000344722 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.23■□□□□ 0.674e-34■■■■■ 131.8
SMC4-201ENST00000344722 NCBP2P52298 156 aaKnown RBP eCLIP17.49■□□□□ 0.396e-34■■■■■ 154.9
SMC4-201ENST00000344722 DDX21Q9NR30 783 aaKnown RBP eCLIP20.09■□□□□ 0.811e-26■■■■■ 198.7
SMC4-201ENST00000344722 TAF15Q92804 592 aaKnown RBP eCLIP15.75■□□□□ 0.117e-26■■■■□ 25.9
SMC4-201ENST00000344722 AKAP1Q92667 903 aaKnown RBP eCLIP17.76■□□□□ 0.434e-24■■■■■ 140.6
SMC4-201ENST00000344722 RBM22Q9NW64 420 aaKnown RBP eCLIP18.31■□□□□ 0.525e-24■■■■■ 66.5
SMC4-201ENST00000344722 HNRNPUQ00839 825 aaKnown RBP eCLIP24.73■■□□□ 1.552e-22■■■■■ 68.1
SMC4-201ENST00000344722 WDR43Q15061 677 aaKnown RBP eCLIP23.91■■□□□ 1.425e-20■■■■■ 85.2
SMC4-201ENST00000344722 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.56■□□□□ 0.563e-18■■■■■ 78.4
SMC4-201ENST00000344722 LARP4Q71RC2 724 aaKnown RBP eCLIP17.39■□□□□ 0.371e-17■■■■□ 24.2
SMC4-201ENST00000344722 RPS11P62280 158 aaKnown RBP eCLIP15.8■□□□□ 0.128e-17■■■■■ 578.9
SMC4-201ENST00000344722 SSBP05455 408 aaKnown RBP eCLIP20.73■□□□□ 0.919e-17■■■■■ 55.5
SMC4-201ENST00000344722 EIF3DO15371 548 aaKnown RBP eCLIP18.97■□□□□ 0.632e-16■■■■■ 56.2
SMC4-201ENST00000344722 SMNDC1O75940 238 aaKnown RBP eCLIP18.69■□□□□ 0.582e-16■■■■■ 67.6
SMC4-201ENST00000344722 NOLC1Q14978 699 aaKnown RBP eCLIP21.29■■□□□ 14e-16■■■■■ 30.2
SMC4-201ENST00000344722 HNRNPLP14866 589 aaKnown RBP eCLIP18.22■□□□□ 0.512e-15■■■■■ 47.4
SMC4-201ENST00000344722 GRSF1Q12849 480 aaKnown RBP eCLIP17.38■□□□□ 0.372e-14■■■■■ 48.8
SMC4-201ENST00000344722 ILF3Q12906 894 aaKnown RBP eCLIP17.18■□□□□ 0.348e-14■■■■■ 40.3
SMC4-201ENST00000344722 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.84■□□□□ 0.451e-13■■■■■ 65.9
SMC4-201ENST00000344722 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.99■□□□□ 0.632e-13■■■■■ 56.3
SMC4-201ENST00000344722 GPKOWQ92917 476 aaPredicted RBP eCLIP19.65■□□□□ 0.742e-13■□□□□ 9.3
SMC4-201ENST00000344722 HNRNPKP61978 463 aaKnown RBP eCLIP16.65■□□□□ 0.265e-13■■■■■ 46
SMC4-201ENST00000344722 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.78■□□□□ 0.65e-13■■■■■ 220.5
SMC4-201ENST00000344722 EIF3GO75821 320 aaKnown RBP eCLIP16.16■□□□□ 0.188e-13■■■■■ 59.2
SMC4-201ENST00000344722 TROVE2P10155 538 aaKnown RBP eCLIP19.99■□□□□ 0.791e-12■■■■■ 61.2
SMC4-201ENST00000344722 YBX3P16989 372 aaKnown RBP eCLIP18.22■□□□□ 0.511e-12■■■■□ 23.5
SMC4-201ENST00000344722 U2AF1Q01081 240 aaKnown RBP eCLIP22.52■■□□□ 1.25e-12■■■■■ 47.2
SMC4-201ENST00000344722 PCBP1Q15365 356 aaKnown RBP eCLIP17.9■□□□□ 0.467e-12■■■■■ 38.2
SMC4-201ENST00000344722 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.39■□□□□ 0.377e-12■■■■■ 38.5
SMC4-201ENST00000344722 UPF1Q92900 1129 aaKnown RBP eCLIP17.42■□□□□ 0.382e-11■■■■■ 40.4
SMC4-201ENST00000344722 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.81■□□□□ 0.922e-10■■■□□ 18.8
SMC4-201ENST00000344722 FXR2P51116 673 aaKnown RBP eCLIP18.98■□□□□ 0.632e-10■■■■■ 37.2
SMC4-201ENST00000344722 SUB1P53999 127 aaKnown RBP eCLIP16.14■□□□□ 0.185e-10■■■■■ 33.9
SMC4-201ENST00000344722 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.32■□□□□ 0.688e-10■■■■□ 19.5
SMC4-201ENST00000344722 HNRNPMP52272 730 aaKnown RBP eCLIP22.03■■□□□ 1.122e-9■□□□□ 8.7
SMC4-201ENST00000344722 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.53■□□□□ 0.722e-9■■■■■ 75.2
SMC4-201ENST00000344722 SAFBQ15424 915 aaKnown RBP eCLIP21.54■■□□□ 1.042e-9■■□□□ 11.5
SMC4-201ENST00000344722 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.69■■□□□ 1.063e-9■■■■■ 74.3
SMC4-201ENST00000344722 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.34■□□□□ 0.214e-9■■■■■ 118.1
SMC4-201ENST00000344722 SND1Q7KZF4 910 aaKnown RBP eCLIP20.33■□□□□ 0.846e-9■■■■■ 32.8
SMC4-201ENST00000344722 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.47■□□□□ 0.237e-9■■■■■ 49
SMC4-201ENST00000344722 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.05■□□□□ 0.81e-8■■■■■ 54.3
SMC4-201ENST00000344722 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.59■□□□□ 0.731e-8■■■■■ 268.2
SMC4-201ENST00000344722 NONOQ15233 471 aaKnown RBP eCLIP19.94■□□□□ 0.782e-8■■■■■ 98.1
SMC4-201ENST00000344722 RBFOX2O43251 390 aaKnown RBP eCLIP15.31■□□□□ 0.043e-8■■■■■ 54.1
SMC4-201ENST00000344722 AATFQ9NY61 560 aaKnown RBP eCLIP19.7■□□□□ 0.744e-8■■■■■ 116
SMC4-201ENST00000344722 AQRO60306 1485 aaKnown RBP eCLIP21.22■□□□□ 0.994e-8■■■■■ 71.8
SMC4-201ENST00000344722 SF3B4Q15427 424 aaKnown RBP eCLIP17.32■□□□□ 0.365e-8■■■■□ 22.8
SMC4-201ENST00000344722 ZNF622Q969S3 477 aaKnown RBP eCLIP20.08■□□□□ 0.85e-8■■□□□ 11.5
SMC4-201ENST00000344722 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.09■□□□□ 0.975e-8■■■□□ 16.4
SMC4-201ENST00000344722 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.55■□□□□ 0.726e-8■■■■□ 23.9
SMC4-201ENST00000344722 SRSF1Q07955 248 aaKnown RBP eCLIP15.03■□□□□ -09e-8■■□□□ 13.7
SMC4-201ENST00000344722 EFTUD2Q15029 972 aaKnown RBP eCLIP19.17■□□□□ 0.661e-7■■□□□ 12.6
SMC4-201ENST00000344722 SF3B1O75533 1304 aaKnown RBP eCLIP18.24■□□□□ 0.511e-7■■■■■ 165.2
SMC4-201ENST00000344722 NIP7Q9Y221 180 aaKnown RBP eCLIP19.81■□□□□ 0.761e-7■■■■■ 83.2
SMC4-201ENST00000344722 PPIGQ13427 754 aaKnown RBP eCLIP17.49■□□□□ 0.392e-7■■■■■ 57.4
SMC4-201ENST00000344722 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.37■■□□□ 1.332e-7■■■■□ 25.5
SMC4-201ENST00000344722 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.1■□□□□ 0.493e-7■■□□□ 12.9
SMC4-201ENST00000344722 FMR1Q06787 632 aaKnown RBP eCLIP19.43■□□□□ 0.73e-7■□□□□ 10
SMC4-201ENST00000344722 SF3A3Q12874 501 aaKnown RBP eCLIP20.01■□□□□ 0.793e-7■■■■■ 122.4
SMC4-201ENST00000344722 KHSRPQ92945 711 aaKnown RBP eCLIP16.93■□□□□ 0.34e-7■■■■■ 32.8
SMC4-201ENST00000344722 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.62■□□□□ 0.735e-7■■■■□ 23.7
SMC4-201ENST00000344722 TIA1P31483 386 aaKnown RBP eCLIP17.34■□□□□ 0.375e-7■■■■□ 23.6
SMC4-201ENST00000344722 TRA2AQ13595 282 aaKnown RBP eCLIP15.59■□□□□ 0.095e-7■■□□□ 14
SMC4-201ENST00000344722 ZC3H11AO75152 810 aaKnown RBP eCLIP18.73■□□□□ 0.595e-7■■■■■ 90.5
SMC4-201ENST00000344722 U2AF2P26368 475 aaKnown RBP eCLIP20.86■□□□□ 0.936e-7■■■■■ 34.1
SMC4-201ENST00000344722 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.68■□□□□ 0.97e-7■■□□□ 12.7
SMC4-201ENST00000344722 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.32□□□□□ -0.287e-7■■■■■ 39.8
SMC4-201ENST00000344722 QKIQ96PU8 341 aaKnown RBP eCLIP18.3■□□□□ 0.527e-7■■■■■ 232.7
SMC4-201ENST00000344722 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.35■□□□□ 0.697e-7■■■■□ 21.2
SMC4-201ENST00000344722 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.55■□□□□ 0.561e-6■■■■■ 406.9
SMC4-201ENST00000344722 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.75■□□□□ 0.911e-6■■■■■ 397.5
SMC4-201ENST00000344722 NIPBLQ6KC79 2804 aaeCLIP9.4□□□□□ -0.912e-6■■■■■ 27.8
SMC4-201ENST00000344722 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.21■□□□□ 0.352e-6■■■■■ 54.3
SMC4-201ENST00000344722 PABPC4Q13310 644 aaKnown RBP eCLIP19.47■□□□□ 0.712e-6■■■■■ 455.6
SMC4-201ENST00000344722 TARDBPQ13148 414 aaKnown RBP eCLIP17.72■□□□□ 0.433e-6■■■■□ 21.4
SMC4-201ENST00000344722 CPSF6Q16630 551 aaKnown RBP eCLIP17.96■□□□□ 0.474e-6■■■□□ 15.6
SMC4-201ENST00000344722 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.6■□□□□ 0.575e-6■■■□□ 17.5
SMC4-201ENST00000344722 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.69■□□□□ 0.587e-6■■■□□ 17.7
SMC4-201ENST00000344722 EIF3HO15372 352 aaKnown RBP eCLIP19.66■□□□□ 0.748e-6■□□□□ 10.6
Retrieved 97 of 97 RNA–protein pairs in 43.5 ms