RNA: ENST00000339570.9

SCARB1-202, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5 BASIC

Gene SCARB1, Length 3,329 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-202ENST00000339570 SMNDC1O75940 238 aaKnown RBP eCLIP17.01■□□□□ 0.316e-24■■■■■ 32.4
SCARB1-202ENST00000339570 PABPC4Q13310 644 aaKnown RBP eCLIP17.71■□□□□ 0.436e-20■□□□□ 9.8
SCARB1-202ENST00000339570 DDX6P26196 483 aaKnown RBP eCLIP14.86□□□□□ -0.035e-18■■□□□ 12.4
SCARB1-202ENST00000339570 RBM22Q9NW64 420 aaKnown RBP eCLIP16.25■□□□□ 0.192e-16■■■■■ 75.9
SCARB1-202ENST00000339570 U2AF1Q01081 240 aaKnown RBP eCLIP20.65■□□□□ 0.93e-14■■□□□ 13.6
SCARB1-202ENST00000339570 U2AF2P26368 475 aaKnown RBP eCLIP19.22■□□□□ 0.673e-14■■■■□ 21.3
SCARB1-202ENST00000339570 SF3B4Q15427 424 aaKnown RBP eCLIP15.77■□□□□ 0.112e-13■■■■■ 41.4
SCARB1-202ENST00000339570 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.38■□□□□ 0.052e-11■■■■□ 19.5
SCARB1-202ENST00000339570 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.96■■□□□ 1.113e-11■■■□□ 17
SCARB1-202ENST00000339570 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.31■□□□□ 0.361e-10■■■■■ 60.3
SCARB1-202ENST00000339570 PUM1Q14671 1186 aaKnown RBP eCLIP15.38■□□□□ 0.053e-10■□□□□ 8.1
SCARB1-202ENST00000339570 SND1Q7KZF4 910 aaKnown RBP eCLIP18.08■□□□□ 0.499e-10■■■■□ 25.5
SCARB1-202ENST00000339570 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.49■□□□□ 0.071e-9■■■■□ 21
SCARB1-202ENST00000339570 EIF4G2P78344 907 aaKnown RBP eCLIP22.27■■□□□ 1.162e-9■■■■□ 23.9
SCARB1-202ENST00000339570 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15□□□□□ -0.013e-9■□□□□ 10.9
SCARB1-202ENST00000339570 HNRNPMP52272 730 aaKnown RBP eCLIP21.54■■□□□ 1.045e-9■■■■□ 25.7
SCARB1-202ENST00000339570 NOLC1Q14978 699 aaKnown RBP eCLIP19.38■□□□□ 0.695e-9■■■■■ 28.5
SCARB1-202ENST00000339570 PPIGQ13427 754 aaKnown RBP eCLIP15.56■□□□□ 0.087e-9■□□□□ 11
SCARB1-202ENST00000339570 LARP4Q71RC2 724 aaKnown RBP eCLIP16.11■□□□□ 0.178e-9■□□□□ 10.2
SCARB1-202ENST00000339570 DDX42Q86XP3 938 aaKnown RBP eCLIP17.86■□□□□ 0.458e-9■□□□□ 10.6
SCARB1-202ENST00000339570 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.48■□□□□ 0.551e-8■■■■□ 21.3
SCARB1-202ENST00000339570 AKAP1Q92667 903 aaKnown RBP eCLIP15.14■□□□□ 0.011e-8■■■■■ 31.5
SCARB1-202ENST00000339570 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.24■□□□□ 0.032e-8■□□□□ 10.3
SCARB1-202ENST00000339570 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.852e-8■□□□□ 8.6
SCARB1-202ENST00000339570 IGF2BP3O00425 579 aaKnown RBP eCLIP17.35■□□□□ 0.373e-8■■■□□ 18.8
SCARB1-202ENST00000339570 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.56■□□□□ 0.43e-8■■■□□ 15.6
SCARB1-202ENST00000339570 DDX3XO00571 662 aaKnown RBP eCLIP17.55■□□□□ 0.43e-8■■■■□ 23.3
SCARB1-202ENST00000339570 UPF1Q92900 1129 aaKnown RBP eCLIP15.53■□□□□ 0.083e-8■■■■■ 40.7
SCARB1-202ENST00000339570 RBFOX2O43251 390 aaKnown RBP eCLIP13.51□□□□□ -0.253e-8■■■■■ 62.6
SCARB1-202ENST00000339570 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.27■□□□□ 0.033e-8■□□□□ 8.6
SCARB1-202ENST00000339570 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.84■□□□□ 0.293e-8■□□□□ 10.2
SCARB1-202ENST00000339570 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.04■□□□□ 0.164e-8■□□□□ 10.2
SCARB1-202ENST00000339570 PCBP2Q15366 365 aaKnown RBP eCLIP15.67■□□□□ 0.15e-8■■□□□ 11.8
SCARB1-202ENST00000339570 AATFQ9NY61 560 aaKnown RBP eCLIP18.17■□□□□ 0.56e-8■■■□□ 16.7
SCARB1-202ENST00000339570 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.64■□□□□ 0.258e-8■□□□□ 9.4
SCARB1-202ENST00000339570 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.37■□□□□ 0.371e-7■■□□□ 13.5
SCARB1-202ENST00000339570 HNRNPLP14866 589 aaKnown RBP eCLIP16.48■□□□□ 0.231e-7■■■■□ 21.9
SCARB1-202ENST00000339570 DKC1O60832 514 aaKnown RBP eCLIP16.72■□□□□ 0.271e-7■■■■□ 19.3
SCARB1-202ENST00000339570 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.88■□□□□ 0.451e-7■■■■□ 24.4
SCARB1-202ENST00000339570 PCBP1Q15365 356 aaKnown RBP eCLIP15.81■□□□□ 0.121e-7■■■□□ 18.8
SCARB1-202ENST00000339570 ZNF622Q969S3 477 aaKnown RBP eCLIP17.39■□□□□ 0.371e-7■□□□□ 9.5
SCARB1-202ENST00000339570 NCBP2P52298 156 aaKnown RBP eCLIP15.22■□□□□ 0.031e-7■□□□□ 9.7
SCARB1-202ENST00000339570 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.85■□□□□ 0.291e-7■□□□□ 8.9
SCARB1-202ENST00000339570 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.2■□□□□ 0.341e-7■■■■■ 49.3
SCARB1-202ENST00000339570 EIF3DO15371 548 aaKnown RBP eCLIP17.22■□□□□ 0.351e-7■□□□□ 8.6
SCARB1-202ENST00000339570 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.57■□□□□ 0.882e-7■■■■□ 22.7
SCARB1-202ENST00000339570 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.2■□□□□ 0.663e-7■□□□□ 9.2
SCARB1-202ENST00000339570 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.69□□□□□ -0.383e-7■■■□□ 14.7
SCARB1-202ENST00000339570 RPS3P23396 243 aaKnown RBP eCLIP15.46■□□□□ 0.074e-7■■■■□ 20.6
SCARB1-202ENST00000339570 RBM15Q96T37 977 aaKnown RBP eCLIP17.18■□□□□ 0.344e-7■■■□□ 17.1
SCARB1-202ENST00000339570 ILF3Q12906 894 aaKnown RBP eCLIP14.61□□□□□ -0.074e-7■■■■■ 41.2
SCARB1-202ENST00000339570 EFTUD2Q15029 972 aaKnown RBP eCLIP17.14■□□□□ 0.344e-7■■■■□ 26.1
SCARB1-202ENST00000339570 GTF2F1P35269 517 aaKnown RBP eCLIP18.97■□□□□ 0.635e-7■■■□□ 18.9
SCARB1-202ENST00000339570 NKRFO15226 690 aaKnown RBP eCLIP18.15■□□□□ 0.55e-7■□□□□ 9.1
SCARB1-202ENST00000339570 PTBP1P26599 531 aaKnown RBP eCLIP14.84□□□□□ -0.035e-7■■■■■ 52.1
SCARB1-202ENST00000339570 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.66■□□□□ 0.15e-7■■■■□ 22.8
SCARB1-202ENST00000339570 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.96■□□□□ 0.156e-7■■■■□ 24.2
SCARB1-202ENST00000339570 PRPF4O43172 522 aaKnown RBP eCLIP16.9■□□□□ 0.36e-7■■□□□ 12.4
SCARB1-202ENST00000339570 AGGF1Q8N302 714 aaeCLIP16.97■□□□□ 0.317e-7■■■■■ 27.5
SCARB1-202ENST00000339570 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.167e-7■■■■■ 33.9
SCARB1-202ENST00000339570 EWSR1Q01844 656 aaKnown RBP eCLIP14.01□□□□□ -0.178e-7■■■□□ 16.1
SCARB1-202ENST00000339570 MATR3P43243 847 aaKnown RBP eCLIP18.27■□□□□ 0.518e-7■■□□□ 13.5
SCARB1-202ENST00000339570 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.96■□□□□ 0.318e-7■■□□□ 12.1
SCARB1-202ENST00000339570 YBX3P16989 372 aaKnown RBP eCLIP16.33■□□□□ 0.21e-6■□□□□ 8
SCARB1-202ENST00000339570 HNRNPKP61978 463 aaKnown RBP eCLIP14.1□□□□□ -0.151e-6■■■■□ 22.7
SCARB1-202ENST00000339570 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.64■□□□□ 0.571e-6■■■□□ 17.3
SCARB1-202ENST00000339570 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.79■□□□□ 0.441e-6■■■■■ 77.2
SCARB1-202ENST00000339570 SF3B1O75533 1304 aaKnown RBP eCLIP16.51■□□□□ 0.231e-6■■■■■ 69.2
SCARB1-202ENST00000339570 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.14■□□□□ 0.341e-6■■■■■ 29.1
SCARB1-202ENST00000339570 TAF15Q92804 592 aaKnown RBP eCLIP13.66□□□□□ -0.222e-6■■■□□ 15
SCARB1-202ENST00000339570 SAFBQ15424 915 aaKnown RBP eCLIP18.46■□□□□ 0.552e-6■■□□□ 11.8
SCARB1-202ENST00000339570 HNRNPUQ00839 825 aaKnown RBP eCLIP22.71■■□□□ 1.232e-6■□□□□ 11
SCARB1-202ENST00000339570 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.54■□□□□ 0.722e-6■■□□□ 13.2
SCARB1-202ENST00000339570 SF3A3Q12874 501 aaKnown RBP eCLIP18.03■□□□□ 0.482e-6■■■□□ 17.8
SCARB1-202ENST00000339570 SRSF1Q07955 248 aaKnown RBP eCLIP12.33□□□□□ -0.442e-6■■□□□ 11.8
SCARB1-202ENST00000339570 CDC40O60508 579 aaKnown RBP eCLIP14.61□□□□□ -0.072e-6■□□□□ 8.5
SCARB1-202ENST00000339570 NONOQ15233 471 aaKnown RBP eCLIP17.86■□□□□ 0.452e-6■■■□□ 17.2
SCARB1-202ENST00000339570 TARDBPQ13148 414 aaKnown RBP eCLIP15.42■□□□□ 0.062e-6■■■■■ 38.5
SCARB1-202ENST00000339570 SFPQP23246 707 aaKnown RBP eCLIP18.78■□□□□ 0.62e-6■■□□□ 12.9
SCARB1-202ENST00000339570 FUSP35637 526 aaKnown RBP eCLIP10.5□□□□□ -0.733e-6■■□□□ 13.4
SCARB1-202ENST00000339570 SRSF7Q16629 238 aaKnown RBP eCLIP13.45□□□□□ -0.263e-6■■■■□ 20.4
SCARB1-202ENST00000339570 AARSP49588 968 aaKnown RBP eCLIP17.86■□□□□ 0.454e-6■■■■■ 30.6
SCARB1-202ENST00000339570 SUB1P53999 127 aaKnown RBP eCLIP12.95□□□□□ -0.344e-6■■■■■ 28.5
SCARB1-202ENST00000339570 ZC3H11AO75152 810 aaKnown RBP eCLIP16.81■□□□□ 0.285e-6■■□□□ 11.9
SCARB1-202ENST00000339570 ZRANB2O95218 330 aaKnown RBP eCLIP18.4■□□□□ 0.548e-6■■■□□ 17.5
SCARB1-202ENST00000339570 WDR43Q15061 677 aaKnown RBP eCLIP21.22■□□□□ 0.998e-6■■□□□ 11.7
SCARB1-202ENST00000339570 EIF3HO15372 352 aaKnown RBP eCLIP17.82■□□□□ 0.441e-5■□□□□ 9.1
Retrieved 87 of 87 RNA–protein pairs in 49 ms