RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.61□□□□□ -0.555e-24■■■■■ 156.6
CUX1-202ENST00000292538 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.68□□□□□ -0.388e-7■■■■■ 154.8
CUX1-202ENST00000292538 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.37□□□□□ -0.596e-7■■■■■ 139.2
CUX1-202ENST00000292538 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■■ 94
CUX1-202ENST00000292538 NIPBLQ6KC79 2804 aaeCLIP8.69□□□□□ -1.023e-10■■■■■ 76.4
CUX1-202ENST00000292538 PABPC4Q13310 644 aaKnown RBP eCLIP12.82□□□□□ -0.362e-20■■■■■ 62.1
CUX1-202ENST00000292538 NIP7Q9Y221 180 aaKnown RBP eCLIP13.72□□□□□ -0.212e-10■■■■■ 60.1
CUX1-202ENST00000292538 SF3B1O75533 1304 aaKnown RBP eCLIP11.7□□□□□ -0.544e-6■■■■■ 58.5
CUX1-202ENST00000292538 AGGF1Q8N302 714 aaeCLIP11.87□□□□□ -0.512e-7■■■■■ 57.8
CUX1-202ENST00000292538 WRNQ14191 1432 aaPredicted RBP eCLIP18.14■□□□□ 0.52e-6■■■■■ 54.1
CUX1-202ENST00000292538 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.39□□□□□ -0.596e-7■■■■■ 53.4
CUX1-202ENST00000292538 AARSP49588 968 aaKnown RBP eCLIP12.2□□□□□ -0.462e-6■■■■■ 51.2
CUX1-202ENST00000292538 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.12□□□□□ -0.476e-12■■■■■ 49.8
CUX1-202ENST00000292538 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.95□□□□□ -0.346e-7■■■■■ 48.9
CUX1-202ENST00000292538 RPS11P62280 158 aaKnown RBP eCLIP10.34□□□□□ -0.756e-6■■■■■ 44.3
CUX1-202ENST00000292538 PTBP1P26599 531 aaKnown RBP eCLIP10.2□□□□□ -0.784e-11■■■■■ 42.8
CUX1-202ENST00000292538 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.72□□□□□ -0.534e-7■■■■■ 40.8
CUX1-202ENST00000292538 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.93□□□□□ -0.666e-6■■■■■ 38.3
CUX1-202ENST00000292538 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.52□□□□□ -0.416e-12■■■■■ 36.6
CUX1-202ENST00000292538 PCBP1Q15365 356 aaKnown RBP eCLIP11.94□□□□□ -0.56e-6■■■■■ 34.5
CUX1-202ENST00000292538 DKC1O60832 514 aaKnown RBP eCLIP12.42□□□□□ -0.421e-7■■■■■ 34.5
CUX1-202ENST00000292538 PCBP2Q15366 365 aaKnown RBP eCLIP11.24□□□□□ -0.611e-6■■■■■ 33.2
CUX1-202ENST00000292538 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.05□□□□□ -0.648e-7■■■■■ 33
CUX1-202ENST00000292538 EIF4G2P78344 907 aaKnown RBP eCLIP16.15■□□□□ 0.181e-6■■■■■ 32.2
CUX1-202ENST00000292538 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.01■□□□□ 0.157e-8■■■■■ 32
CUX1-202ENST00000292538 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.34□□□□□ -0.751e-6■■■■■ 31.5
CUX1-202ENST00000292538 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.49□□□□□ -0.572e-6■■■■■ 29.2
CUX1-202ENST00000292538 HNRNPLP14866 589 aaKnown RBP eCLIP11.57□□□□□ -0.566e-8■■■■■ 28.9
CUX1-202ENST00000292538 SRSF7Q16629 238 aaKnown RBP eCLIP9.62□□□□□ -0.871e-8■■■■■ 28.4
CUX1-202ENST00000292538 U2AF2P26368 475 aaKnown RBP eCLIP13.22□□□□□ -0.291e-7■■■■■ 27.9
CUX1-202ENST00000292538 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■■ 27.8
CUX1-202ENST00000292538 AATFQ9NY61 560 aaKnown RBP eCLIP13.44□□□□□ -0.261e-6■■■■■ 27.8
CUX1-202ENST00000292538 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.22□□□□□ -0.933e-7■■■■■ 26.8
CUX1-202ENST00000292538 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.71□□□□□ -0.541e-8■■■■□ 26.3
CUX1-202ENST00000292538 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■■■□ 26.1
CUX1-202ENST00000292538 TARDBPQ13148 414 aaKnown RBP eCLIP10.82□□□□□ -0.689e-7■■■■□ 26.1
CUX1-202ENST00000292538 ZC3H11AO75152 810 aaKnown RBP eCLIP12.24□□□□□ -0.453e-6■■■■□ 25.7
CUX1-202ENST00000292538 METAP2P50579 478 aaKnown RBP eCLIP13.45□□□□□ -0.263e-6■■■■□ 24.7
CUX1-202ENST00000292538 HNRNPKP61978 463 aaKnown RBP eCLIP10.67□□□□□ -0.71e-6■■■■□ 24.1
CUX1-202ENST00000292538 FUSP35637 526 aaKnown RBP eCLIP7.44□□□□□ -1.225e-7■■■■□ 23.7
CUX1-202ENST00000292538 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.85□□□□□ -0.672e-10■■■■□ 23.5
CUX1-202ENST00000292538 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.58□□□□□ -0.561e-6■■■■□ 23.3
CUX1-202ENST00000292538 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.68□□□□□ -0.384e-6■■■■□ 23.2
CUX1-202ENST00000292538 MATR3P43243 847 aaKnown RBP eCLIP12.6□□□□□ -0.395e-7■■■■□ 22.9
CUX1-202ENST00000292538 QKIQ96PU8 341 aaKnown RBP eCLIP11.83□□□□□ -0.526e-15■■■■□ 22.1
CUX1-202ENST00000292538 HNRNPUQ00839 825 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■■■□ 21.8
CUX1-202ENST00000292538 ILF3Q12906 894 aaKnown RBP eCLIP10.88□□□□□ -0.674e-7■■■■□ 21.7
CUX1-202ENST00000292538 FMR1Q06787 632 aaKnown RBP eCLIP13.06□□□□□ -0.324e-6■■■■□ 21.6
CUX1-202ENST00000292538 AKAP1Q92667 903 aaKnown RBP eCLIP10.17□□□□□ -0.781e-6■■■■□ 21.5
CUX1-202ENST00000292538 TIA1P31483 386 aaKnown RBP eCLIP11.03□□□□□ -0.641e-6■■■■□ 21
CUX1-202ENST00000292538 EFTUD2Q15029 972 aaKnown RBP eCLIP11.97□□□□□ -0.498e-8■■■■□ 20.9
CUX1-202ENST00000292538 SF3B4Q15427 424 aaKnown RBP eCLIP10.2□□□□□ -0.785e-6■■■■□ 20.8
CUX1-202ENST00000292538 SFPQP23246 707 aaKnown RBP eCLIP13.01□□□□□ -0.331e-6■■■■□ 20.4
CUX1-202ENST00000292538 RBM15Q96T37 977 aaKnown RBP eCLIP12.05□□□□□ -0.481e-11■■■■□ 20.4
CUX1-202ENST00000292538 RPS3P23396 243 aaKnown RBP eCLIP11.25□□□□□ -0.611e-7■■■■□ 20.3
CUX1-202ENST00000292538 KHSRPQ92945 711 aaKnown RBP eCLIP11.97□□□□□ -0.493e-7■■■■□ 19.9
CUX1-202ENST00000292538 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.96□□□□□ -0.53e-6■■■■□ 19.4
CUX1-202ENST00000292538 HNRNPMP52272 730 aaKnown RBP eCLIP16.39■□□□□ 0.219e-7■■■□□ 19.2
CUX1-202ENST00000292538 RBM5P52756 815 aaKnown RBP eCLIP13.21□□□□□ -0.34e-7■■■□□ 19.1
CUX1-202ENST00000292538 GTF2F1P35269 517 aaKnown RBP eCLIP12.75□□□□□ -0.372e-8■■■□□ 18.7
CUX1-202ENST00000292538 NONOQ15233 471 aaKnown RBP eCLIP13.01□□□□□ -0.331e-6■■■□□ 18.5
CUX1-202ENST00000292538 CSTF2P33240 577 aaKnown RBP eCLIP10.63□□□□□ -0.712e-6■■■□□ 18.4
CUX1-202ENST00000292538 RBFOX2O43251 390 aaKnown RBP eCLIP9.36□□□□□ -0.916e-7■■■□□ 18.3
CUX1-202ENST00000292538 PPIGQ13427 754 aaKnown RBP eCLIP11.34□□□□□ -0.598e-7■■■□□ 18.1
CUX1-202ENST00000292538 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.2□□□□□ -0.33e-7■■■□□ 17.9
CUX1-202ENST00000292538 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.91□□□□□ -0.54e-7■■■□□ 17.6
CUX1-202ENST00000292538 LSM11P83369 360 aaKnown RBP eCLIP10.84□□□□□ -0.675e-6■■■□□ 16.8
CUX1-202ENST00000292538 DDX6P26196 483 aaKnown RBP eCLIP11.25□□□□□ -0.619e-7■■■□□ 16.7
CUX1-202ENST00000292538 EIF3HO15372 352 aaKnown RBP eCLIP12.06□□□□□ -0.481e-7■■■□□ 16.5
CUX1-202ENST00000292538 NKRFO15226 690 aaKnown RBP eCLIP12.83□□□□□ -0.366e-7■■■□□ 16.5
CUX1-202ENST00000292538 EWSR1Q01844 656 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■□□ 16.3
CUX1-202ENST00000292538 YBX3P16989 372 aaKnown RBP eCLIP12.48□□□□□ -0.413e-6■■■□□ 15.7
CUX1-202ENST00000292538 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.61□□□□□ -0.237e-7■■■□□ 15.6
CUX1-202ENST00000292538 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.33□□□□□ -0.441e-6■■■□□ 15.3
CUX1-202ENST00000292538 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.97□□□□□ -0.654e-7■■■□□ 15
CUX1-202ENST00000292538 PUM1Q14671 1186 aaKnown RBP eCLIP10.85□□□□□ -0.675e-7■■■□□ 14.6
CUX1-202ENST00000292538 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.14□□□□□ -0.799e-7■■□□□ 14.3
CUX1-202ENST00000292538 LARP4Q71RC2 724 aaKnown RBP eCLIP11.34□□□□□ -0.593e-6■■□□□ 13.7
CUX1-202ENST00000292538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.26■□□□□ 0.191e-6■■□□□ 13.7
CUX1-202ENST00000292538 HNRNPCP07910 306 aaKnown RBP eCLIP10.58□□□□□ -0.727e-7■■□□□ 13.7
CUX1-202ENST00000292538 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.82□□□□□ -0.843e-6■■□□□ 13.5
CUX1-202ENST00000292538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.51■□□□□ 0.232e-6■■□□□ 13.4
CUX1-202ENST00000292538 DDX3XO00571 662 aaKnown RBP eCLIP12.47□□□□□ -0.411e-8■■□□□ 13.3
CUX1-202ENST00000292538 ZNF622Q969S3 477 aaKnown RBP eCLIP13.28□□□□□ -0.281e-7■■□□□ 13.1
CUX1-202ENST00000292538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.05□□□□□ -0.167e-7■■□□□ 13.1
CUX1-202ENST00000292538 NCBP2P52298 156 aaKnown RBP eCLIP10.92□□□□□ -0.662e-6■■□□□ 13
CUX1-202ENST00000292538 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.8□□□□□ -0.368e-7■■□□□ 12.7
CUX1-202ENST00000292538 NOLC1Q14978 699 aaKnown RBP eCLIP13.13□□□□□ -0.313e-6■■□□□ 12.3
CUX1-202ENST00000292538 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.291e-9■■□□□ 12.2
CUX1-202ENST00000292538 SMNDC1O75940 238 aaKnown RBP eCLIP11.19□□□□□ -0.621e-5■■□□□ 11.9
CUX1-202ENST00000292538 TROVE2P10155 538 aaKnown RBP eCLIP11.73□□□□□ -0.533e-6■■□□□ 11.8
CUX1-202ENST00000292538 PRPF4O43172 522 aaKnown RBP eCLIP11.78□□□□□ -0.523e-6■■□□□ 11.6
CUX1-202ENST00000292538 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.48□□□□□ -0.734e-6■■□□□ 11.4
CUX1-202ENST00000292538 U2AF1Q01081 240 aaKnown RBP eCLIP15.12■□□□□ 0.015e-6■□□□□ 11.2
CUX1-202ENST00000292538 DDX21Q9NR30 783 aaKnown RBP eCLIP14.11□□□□□ -0.151e-7■□□□□ 10.9
CUX1-202ENST00000292538 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.16■□□□□ 0.023e-6■□□□□ 10.3
CUX1-202ENST00000292538 GPKOWQ92917 476 aaPredicted RBP eCLIP13.22□□□□□ -0.297e-6■□□□□ 10
CUX1-202ENST00000292538 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.92□□□□□ -0.347e-6■□□□□ 9.2
CUX1-202ENST00000292538 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.07□□□□□ -0.483e-6■□□□□ 8.8
Retrieved 99 of 99 RNA–protein pairs in 45.8 ms