RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.71■■■□□ 2.352e-7■■■■■ 196
CBX4-201ENST00000269397 GTF2F1P35269 517 aaKnown RBP eCLIP32.75■■■□□ 2.837e-10■■■■■ 142.2
CBX4-201ENST00000269397 TIA1P31483 386 aaKnown RBP eCLIP26.31■■□□□ 1.82e-7■■■■■ 43.7
CBX4-201ENST00000269397 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.58■□□□□ 0.882e-8■■■■■ 39.6
CBX4-201ENST00000269397 PUM2Q8TB72 1066 aaKnown RBP eCLIP26.21■■□□□ 1.793e-19■■■■■ 37
CBX4-201ENST00000269397 SLTMQ9NWH9 1034 aaKnown RBP eCLIP29.58■■■□□ 2.333e-8■■■■■ 30.4
CBX4-201ENST00000269397 SF3B1O75533 1304 aaKnown RBP eCLIP28.28■■■□□ 2.121e-6■■■■■ 30
CBX4-201ENST00000269397 FTOQ9C0B1 505 aaKnown RBP eCLIP32.44■■■□□ 2.789e-12■■■■■ 29.8
CBX4-201ENST00000269397 LSM11P83369 360 aaKnown RBP eCLIP26.14■■□□□ 1.781e-6■■■■■ 28.9
CBX4-201ENST00000269397 EWSR1Q01844 656 aaKnown RBP eCLIP23.86■■□□□ 1.412e-6■■■■■ 28.6
CBX4-201ENST00000269397 AQRO60306 1485 aaKnown RBP eCLIP38.53■■■■□ 3.765e-8■■■■■ 28.1
CBX4-201ENST00000269397 SF3A3Q12874 501 aaKnown RBP eCLIP29.99■■■□□ 2.393e-6■■■■■ 27.2
CBX4-201ENST00000269397 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.62■■■■□ 3.771e-8■■■■□ 26.5
CBX4-201ENST00000269397 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP29.69■■■□□ 2.342e-10■■■■□ 26.4
CBX4-201ENST00000269397 AKAP1Q92667 903 aaKnown RBP eCLIP25.81■■□□□ 1.722e-7■■■■□ 26
CBX4-201ENST00000269397 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.62■■□□□ 1.854e-7■■■■□ 25.9
CBX4-201ENST00000269397 PABPC4Q13310 644 aaKnown RBP eCLIP30■■■□□ 2.393e-7■■■■□ 25.7
CBX4-201ENST00000269397 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP28.04■■■□□ 2.083e-8■■■■□ 24.6
CBX4-201ENST00000269397 RBM15Q96T37 977 aaKnown RBP eCLIP29.23■■■□□ 2.274e-7■■■■□ 24.3
CBX4-201ENST00000269397 SF3B4Q15427 424 aaKnown RBP eCLIP26.74■■□□□ 1.875e-8■■■■□ 23.9
CBX4-201ENST00000269397 CDC40O60508 579 aaKnown RBP eCLIP24.86■■□□□ 1.571e-7■■■■□ 23.9
CBX4-201ENST00000269397 DDX6P26196 483 aaKnown RBP eCLIP25.49■■□□□ 1.673e-6■■■■□ 23.9
CBX4-201ENST00000269397 EFTUD2Q15029 972 aaKnown RBP eCLIP29.06■■■□□ 2.242e-7■■■■□ 23.9
CBX4-201ENST00000269397 RBFOX2O43251 390 aaKnown RBP eCLIP22.97■■□□□ 1.276e-7■■■■□ 23.2
CBX4-201ENST00000269397 AARSP49588 968 aaKnown RBP eCLIP30.78■■■□□ 2.522e-6■■■■□ 23
CBX4-201ENST00000269397 PRPF4O43172 522 aaKnown RBP eCLIP29.06■■■□□ 2.249e-7■■■■□ 22.3
CBX4-201ENST00000269397 FUSP35637 526 aaKnown RBP eCLIP17.77■□□□□ 0.441e-6■■■■□ 21.4
CBX4-201ENST00000269397 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.28■■■□□ 2.123e-13■■■■□ 21.2
CBX4-201ENST00000269397 RBM22Q9NW64 420 aaKnown RBP eCLIP27.58■■■□□ 2.017e-7■■■■□ 21
CBX4-201ENST00000269397 DDX51Q8N8A6 666 aaKnown RBP eCLIP28.67■■■□□ 2.181e-10■■■■□ 20.7
CBX4-201ENST00000269397 DDX42Q86XP3 938 aaKnown RBP eCLIP30.23■■■□□ 2.431e-6■■■■□ 20.6
CBX4-201ENST00000269397 U2AF1Q01081 240 aaKnown RBP eCLIP35.02■■■■□ 3.23e-8■■■■□ 20
CBX4-201ENST00000269397 MTPAPQ9NVV4 582 aaKnown RBP eCLIP26.96■■□□□ 1.912e-6■■■■□ 19.8
CBX4-201ENST00000269397 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.85■■■■□ 3.332e-7■■■□□ 18.4
CBX4-201ENST00000269397 NONOQ15233 471 aaKnown RBP eCLIP30.47■■■□□ 2.471e-9■■■□□ 18.4
CBX4-201ENST00000269397 ZNF800Q2TB10 664 aaPredicted RBP eCLIP26.11■■□□□ 1.777e-8■■■□□ 18.2
CBX4-201ENST00000269397 PCBP2Q15366 365 aaKnown RBP eCLIP26.93■■□□□ 1.94e-7■■■□□ 18.2
CBX4-201ENST00000269397 FKBP4Q02790 459 aaKnown RBP eCLIP31.96■■■□□ 2.713e-6■■■□□ 17
CBX4-201ENST00000269397 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP31.83■■■□□ 2.698e-7■■■□□ 16.6
CBX4-201ENST00000269397 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP26.82■■□□□ 1.882e-6■■■□□ 16.5
CBX4-201ENST00000269397 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.67■■□□□ 1.72e-7■■■□□ 16.2
CBX4-201ENST00000269397 GPKOWQ92917 476 aaPredicted RBP eCLIP30.87■■■□□ 2.532e-6■■■□□ 16
CBX4-201ENST00000269397 SMNDC1O75940 238 aaKnown RBP eCLIP29.12■■■□□ 2.251e-7■■■□□ 15.1
CBX4-201ENST00000269397 TRA2AQ13595 282 aaKnown RBP eCLIP23.08■■□□□ 1.293e-8■■■□□ 14.7
CBX4-201ENST00000269397 FUBP3Q96I24 572 aaKnown RBP eCLIP26.85■■□□□ 1.891e-8■■■□□ 14.6
CBX4-201ENST00000269397 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.03■■■□□ 2.41e-6■■□□□ 14.5
CBX4-201ENST00000269397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.45■■■■□ 3.438e-7■■□□□ 14.4
CBX4-201ENST00000269397 WDR43Q15061 677 aaKnown RBP eCLIP36.06■■■■□ 3.361e-5■■□□□ 14.2
CBX4-201ENST00000269397 NIPBLQ6KC79 2804 aaeCLIP19.72■□□□□ 0.752e-6■■□□□ 14
CBX4-201ENST00000269397 ZNF622Q969S3 477 aaKnown RBP eCLIP29.17■■■□□ 2.264e-7■■□□□ 13.7
CBX4-201ENST00000269397 PPIGQ13427 754 aaKnown RBP eCLIP26.53■■□□□ 1.844e-11■■□□□ 13.5
CBX4-201ENST00000269397 U2AF2P26368 475 aaKnown RBP eCLIP32.54■■■□□ 2.87e-10■■□□□ 13.4
CBX4-201ENST00000269397 DDX3XO00571 662 aaKnown RBP eCLIP29.97■■■□□ 2.391e-23■■□□□ 13.3
CBX4-201ENST00000269397 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP27.29■■□□□ 1.962e-6■■□□□ 12.6
CBX4-201ENST00000269397 AATFQ9NY61 560 aaKnown RBP eCLIP31.19■■■□□ 2.588e-7■■□□□ 12.5
CBX4-201ENST00000269397 FXR2P51116 673 aaKnown RBP eCLIP30.26■■■□□ 2.432e-6■■□□□ 12
CBX4-201ENST00000269397 PUM1Q14671 1186 aaKnown RBP eCLIP26.25■■□□□ 1.791e-6■■□□□ 12
CBX4-201ENST00000269397 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP28.93■■■□□ 2.229e-6■■□□□ 11.8
CBX4-201ENST00000269397 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.22■■■□□ 2.277e-7■□□□□ 11.3
CBX4-201ENST00000269397 RPS3P23396 243 aaKnown RBP eCLIP26.65■■□□□ 1.867e-7■□□□□ 11
CBX4-201ENST00000269397 SDAD1Q9NVU7 687 aaKnown RBP eCLIP28.77■■■□□ 2.23e-7■□□□□ 11
CBX4-201ENST00000269397 UPF1Q92900 1129 aaKnown RBP eCLIP26.43■■□□□ 1.827e-8■□□□□ 10.9
CBX4-201ENST00000269397 CSTF2P33240 577 aaKnown RBP eCLIP26.23■■□□□ 1.793e-7■□□□□ 10.7
CBX4-201ENST00000269397 XRCC6P12956 609 aaKnown RBP eCLIP34.77■■■■□ 3.165e-8■□□□□ 10.6
CBX4-201ENST00000269397 NKRFO15226 690 aaKnown RBP eCLIP30.79■■■□□ 2.521e-6■□□□□ 10.1
CBX4-201ENST00000269397 NCBP2P52298 156 aaKnown RBP eCLIP25.83■■□□□ 1.733e-8■□□□□ 10.1
CBX4-201ENST00000269397 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.08■■■□□ 2.251e-13■□□□□ 9.5
CBX4-201ENST00000269397 METAP2P50579 478 aaKnown RBP eCLIP31.69■■■□□ 2.668e-7■□□□□ 9.4
CBX4-201ENST00000269397 HLTFQ14527 1009 aaKnown RBP eCLIP30.24■■■□□ 2.436e-7■□□□□ 8.6
Retrieved 69 of 69 RNA–protein pairs in 61.4 ms