Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC43.68■■■■■ 4.58not detected
YBX3P16989 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC43.26■■■■■ 4.52not detected
YBX3P16989 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC43.16■■■■■ 4.5not detected
YBX3P16989 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC42.27■■■■■ 4.366e-9■■■□□ 17.4
YBX3P16989 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC42.06■■■■■ 4.32not detected
YBX3P16989 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC41.89■■■■■ 4.3not detected
YBX3P16989 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC41.76■■■■■ 4.286e-8■□□□□ 11.1
YBX3P16989 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC41.73■■■■■ 4.27not detected
YBX3P16989 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC41.66■■■■■ 4.267e-16■□□□□ 10.2
YBX3P16989 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC41.63■■■■■ 4.25not detected
YBX3P16989 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC41.15■■■■■ 4.18not detected
YBX3P16989 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC41.13■■■■■ 4.17not detected
YBX3P16989 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC41.09■■■■■ 4.17not detected
YBX3P16989 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC41.08■■■■■ 4.173e-7■□□□□ 10.1
YBX3P16989 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC41.02■■■■■ 4.16not detected
YBX3P16989 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC40.94■■■■■ 4.14not detected
YBX3P16989 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC40.76■■■■■ 4.122e-11■□□□□ 8.9
YBX3P16989 AL356512.1-201ENST00000607453 1739 ntBASIC40.64■■■■■ 4.1not detected
YBX3P16989 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC40.43■■■■■ 4.06not detected
YBX3P16989 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC40.43■■■■■ 4.06not detected
YBX3P16989 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC40.41■■■■■ 4.06not detected
YBX3P16989 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC40.4■■■■■ 4.06not detected
YBX3P16989 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC40.35■■■■■ 4.05not detected
YBX3P16989 ZNRF2P1-201ENST00000441407 443 ntBASIC40.23■■■■■ 4.03not detected
YBX3P16989 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC40.17■■■■■ 4.02not detected
YBX3P16989 INO80B-203ENST00000409917 796 ntTSL 2 BASIC40.17■■■■■ 4.02not detected
YBX3P16989 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC40.13■■■■■ 4.01not detected
YBX3P16989 AC006077.2-201ENST00000623591 457 ntBASIC40.09■■■■■ 4.01not detected
YBX3P16989 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC40.09■■■■■ 4.01not detected
YBX3P16989 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC39.91■■■■□ 3.98not detected
YBX3P16989 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC39.65■■■■□ 3.944e-8■■■□□ 18.9
YBX3P16989 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC39.57■■■■□ 3.93not detected
YBX3P16989 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC39.5■■■■□ 3.91not detected
YBX3P16989 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC39.5■■■■□ 3.91not detected
YBX3P16989 AC015813.7-201ENST00000623294 581 ntBASIC39.36■■■■□ 3.89not detected
YBX3P16989 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC39.31■■■■□ 3.886e-17■■□□□ 12.5
YBX3P16989 AP002365.1-201ENST00000603448 772 ntBASIC39.21■■■■□ 3.87not detected
YBX3P16989 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC38.96■■■■□ 3.83not detected
YBX3P16989 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC38.96■■■■□ 3.83not detected
YBX3P16989 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.89■■■■□ 3.82not detected
YBX3P16989 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC38.89■■■■□ 3.82not detected
YBX3P16989 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8not detected
YBX3P16989 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC38.78■■■■□ 3.8not detected
YBX3P16989 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC38.73■■■■□ 3.79not detected
YBX3P16989 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78not detected
YBX3P16989 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC38.66■■■■□ 3.78not detected
YBX3P16989 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC38.66■■■■□ 3.78not detected
YBX3P16989 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC38.64■■■■□ 3.78not detected
YBX3P16989 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC38.57■■■■□ 3.76not detected
YBX3P16989 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC38.5■■■■□ 3.759e-6■■■□□ 18.1
YBX3P16989 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC38.47■■■■□ 3.75not detected
YBX3P16989 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75not detected
YBX3P16989 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC38.43■■■■□ 3.74not detected
YBX3P16989 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC38.4■■■■□ 3.74not detected
YBX3P16989 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC38.39■■■■□ 3.74not detected
YBX3P16989 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC38.38■■■■□ 3.734e-7■■■□□ 18.5
YBX3P16989 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC38.35■■■■□ 3.73not detected
YBX3P16989 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC38.33■■■■□ 3.733e-7■□□□□ 10.1
YBX3P16989 HES6-203ENST00000409160 1600 ntTSL 2 BASIC38.31■■■■□ 3.72not detected
YBX3P16989 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC38.23■■■■□ 3.71not detected
YBX3P16989 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.74e-6■■□□□ 13
YBX3P16989 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC38.17■■■■□ 3.7not detected
YBX3P16989 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC38.17■■■■□ 3.7not detected
YBX3P16989 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC38.14■■■■□ 3.7not detected
YBX3P16989 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC38.08■■■■□ 3.69not detected
YBX3P16989 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC38.07■■■■□ 3.68not detected
YBX3P16989 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC38.04■■■■□ 3.68not detected
YBX3P16989 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC38.02■■■■□ 3.68not detected
YBX3P16989 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC37.98■■■■□ 3.67not detected
YBX3P16989 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC37.98■■■■□ 3.67not detected
YBX3P16989 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC37.95■■■■□ 3.674e-7■■■■■ 28.3
YBX3P16989 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC37.95■■■■□ 3.67not detected
YBX3P16989 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC37.89■■■■□ 3.66not detected
YBX3P16989 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.653e-8■■■■■ 27.2
YBX3P16989 DYNLL1-208ENST00000550178 581 ntBASIC37.87■■■■□ 3.659e-8■■□□□ 11.6
YBX3P16989 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC37.84■■■■□ 3.65not detected
YBX3P16989 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC37.83■■■■□ 3.65not detected
YBX3P16989 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.657e-9■■□□□ 13.6
YBX3P16989 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC37.82■■■■□ 3.64not detected
YBX3P16989 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC37.81■■■■□ 3.64not detected
YBX3P16989 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.649e-8■■■□□ 16.8
YBX3P16989 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC37.75■■■■□ 3.63not detected
YBX3P16989 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC37.75■■■■□ 3.63not detected
YBX3P16989 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63not detected
YBX3P16989 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC37.73■■■■□ 3.63not detected
YBX3P16989 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC37.71■■■■□ 3.63not detected
YBX3P16989 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC37.71■■■■□ 3.63not detected
YBX3P16989 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62not detected
YBX3P16989 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC37.63■■■■□ 3.61not detected
YBX3P16989 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61not detected
YBX3P16989 AL031258.1-201ENST00000623562 325 ntBASIC37.57■■■■□ 3.6not detected
YBX3P16989 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC37.56■■■■□ 3.6not detected
YBX3P16989 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC37.56■■■■□ 3.62e-6■■□□□ 12.3
YBX3P16989 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6not detected
YBX3P16989 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.53■■■■□ 3.6not detected
YBX3P16989 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.53■■■■□ 3.6not detected
YBX3P16989 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC37.51■■■■□ 3.6not detected
YBX3P16989 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC37.51■■■■□ 3.6not detected
YBX3P16989 RPS2P35-201ENST00000443417 897 ntBASIC37.44■■■■□ 3.58not detected
YBX3P16989 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC37.42■■■■□ 3.58not detected
Retrieved 100 of 98,524 protein–RNA pairs in 327.2 ms