Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPLP0-213ENST00000548568 1127 ntTSL 1 (best)12.63□□□□□ -0.392e-88■■□□□ 13
YBX3P16989 RPLP0-208ENST00000547191 680 ntTSL 512.63□□□□□ -0.392e-88■■□□□ 12.9
YBX3P16989 RPLP0-227ENST00000552902 869 ntTSL 227.34■■□□□ 1.973e-88■■□□□ 13.4
YBX3P16989 RPLP0-211ENST00000548495 651 ntTSL 311.91□□□□□ -0.53e-88■■□□□ 13.3
YBX3P16989 RPLP0-216ENST00000550296 562 ntTSL 216.84■□□□□ 0.293e-88■■□□□ 13.7
YBX3P16989 RPS17-203ENST00000559273 580 ntTSL 222.12■■□□□ 1.135e-87■■□□□ 13
YBX3P16989 RPL34-206ENST00000504231 629 ntTSL 1 (best)10.87□□□□□ -0.678e-87■■■□□ 15.2
YBX3P16989 RPL13-208ENST00000487034 615 ntTSL 1 (best)30.12■■■□□ 2.413e-85■■■□□ 16
YBX3P16989 RPS27-204ENST00000493224 573 ntTSL 223.34■■□□□ 1.335e-83■■□□□ 12.1
YBX3P16989 RPS27-203ENST00000477151 467 ntTSL 217.03■□□□□ 0.325e-83■■□□□ 12.1
YBX3P16989 RPS27-202ENST00000392558 625 ntTSL 2 BASIC9.71□□□□□ -0.865e-83■■□□□ 12.1
YBX3P16989 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.115e-83■■□□□ 12.1
YBX3P16989 RPS11-207ENST00000601216 602 ntTSL 413.75□□□□□ -0.211e-82■□□□□ 10.1
YBX3P16989 RPS11-203ENST00000596873 583 ntTSL 2 BASIC10.09□□□□□ -0.791e-82■□□□□ 10.1
YBX3P16989 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.96■□□□□ 0.797e-82■□□□□ 8.6
YBX3P16989 RPL19-208ENST00000585199 402 ntTSL 214.79□□□□□ -0.044e-81■■□□□ 13.5
YBX3P16989 RPS15-204ENST00000586656 436 ntTSL 319.1■□□□□ 0.651e-80■■□□□ 12.2
YBX3P16989 EEF2-205ENST00000598436 549 ntTSL 216.15■□□□□ 0.181e-80■□□□□ 8.9
YBX3P16989 EEF2-204ENST00000598182 581 ntTSL 218.1■□□□□ 0.492e-80■□□□□ 9.1
YBX3P16989 RPL35A-208ENST00000485439 677 ntTSL 210.44□□□□□ -0.741e-79■■□□□ 13.1
YBX3P16989 RPL35A-201ENST00000329092 456 ntTSL 38.25□□□□□ -1.091e-79■■□□□ 13.1
YBX3P16989 ACTB-210ENST00000477812 820 ntTSL 224.86■■□□□ 1.572e-79■□□□□ 9.9
YBX3P16989 ACTB-203ENST00000417101 472 ntTSL 429.7■■■□□ 2.354e-79■□□□□ 9.7
YBX3P16989 ACTB-211ENST00000480301 657 ntTSL 1 (best)27.23■■□□□ 1.954e-79■□□□□ 9.7
YBX3P16989 ACTB-205ENST00000432588 568 ntTSL 422.06■■□□□ 1.124e-79■□□□□ 9.7
YBX3P16989 ACTB-202ENST00000414620 561 ntTSL 421.05■□□□□ 0.964e-79■□□□□ 9.7
YBX3P16989 ACTB-206ENST00000443528 569 ntTSL 420.35■□□□□ 0.854e-79■□□□□ 9.7
YBX3P16989 RPLP2-205ENST00000527517 646 ntTSL 213.57□□□□□ -0.242e-77■□□□□ 10.4
YBX3P16989 HBG2-201ENST00000336906 602 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.263e-77■□□□□ 8.4
YBX3P16989 RPL11-203ENST00000458455 721 ntTSL 1 (best)16.27■□□□□ 0.24e-77■■□□□ 13.1
YBX3P16989 RPL11-205ENST00000482370 879 ntTSL 1 (best)11.65□□□□□ -0.544e-77■■□□□ 13.1
YBX3P16989 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.64e-77■■□□□ 13.1
YBX3P16989 RPL11-202ENST00000443624 994 ntTSL 210.89□□□□□ -0.674e-77■■□□□ 13.1
YBX3P16989 RPS3-206ENST00000526248 771 ntTSL 521.25■□□□□ 0.996e-77■□□□□ 9.7
YBX3P16989 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.96■□□□□ 0.796e-77■□□□□ 9.7
YBX3P16989 RPS3-216ENST00000530721 796 ntTSL 317.32■□□□□ 0.366e-77■□□□□ 9.7
YBX3P16989 RPS3-218ENST00000532872 737 ntTSL 317.32■□□□□ 0.366e-77■□□□□ 9.7
YBX3P16989 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.126e-77■□□□□ 9.7
YBX3P16989 RPS3-205ENST00000525933 1307 ntTSL 515.19■□□□□ 0.026e-77■□□□□ 9.7
YBX3P16989 RPS3-212ENST00000529173 1373 ntTSL 514.42□□□□□ -0.16e-77■□□□□ 9.7
YBX3P16989 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.196e-77■□□□□ 9.7
YBX3P16989 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.316e-77■□□□□ 9.7
YBX3P16989 RPS3-202ENST00000422465 903 ntTSL 212.96□□□□□ -0.336e-77■□□□□ 9.7
YBX3P16989 RPS3-207ENST00000526608 710 ntTSL 5 BASIC12.72□□□□□ -0.376e-77■□□□□ 9.7
YBX3P16989 RPS3-219ENST00000534440 564 ntTSL 2 BASIC12.56□□□□□ -0.46e-77■□□□□ 9.7
YBX3P16989 RPS3-210ENST00000528439 473 ntTSL 311.94□□□□□ -0.56e-77■□□□□ 9.7
YBX3P16989 RPS3-204ENST00000525690 421 ntTSL 311.93□□□□□ -0.56e-77■□□□□ 9.7
YBX3P16989 RPS3-215ENST00000530170 531 ntTSL 511.01□□□□□ -0.656e-77■□□□□ 9.7
YBX3P16989 RPL11-204ENST00000467075 377 ntTSL 315.64■□□□□ 0.098e-77■■□□□ 11.5
YBX3P16989 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)20.83■□□□□ 0.932e-76■□□□□ 9
YBX3P16989 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.932e-76■□□□□ 9
YBX3P16989 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC18.16■□□□□ 0.52e-76■□□□□ 9
YBX3P16989 RPL13A-212ENST00000488946 2312 ntTSL 216■□□□□ 0.152e-76■□□□□ 9
YBX3P16989 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.025e-76■□□□□ 10.7
YBX3P16989 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.865e-76■□□□□ 10.7
YBX3P16989 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.365e-76■□□□□ 10.7
YBX3P16989 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.355e-76■□□□□ 10.7
YBX3P16989 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.265e-76■□□□□ 10.7
YBX3P16989 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.215e-76■□□□□ 10.7
YBX3P16989 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.08■□□□□ 0.175e-76■□□□□ 10.7
YBX3P16989 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.07■□□□□ 05e-76■□□□□ 10.7
YBX3P16989 ALDOA-211ENST00000564521 2534 ntTSL 513.5□□□□□ -0.255e-76■□□□□ 10.7
YBX3P16989 ALDOA-217ENST00000566130 801 ntTSL 218.81■□□□□ 0.61e-75■□□□□ 9.8
YBX3P16989 GAPDH-211ENST00000619601 1086 ntTSL 5 BASIC14.73□□□□□ -0.052e-75■■□□□ 11.9
YBX3P16989 ALDOA-215ENST00000565355 538 ntTSL 520.24■□□□□ 0.832e-75■□□□□ 10.3
YBX3P16989 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.98■■■□□ 2.076e-75■■□□□ 12.2
YBX3P16989 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC25.87■■□□□ 1.736e-75■■□□□ 12.2
YBX3P16989 RPS15-203ENST00000586096 570 ntTSL 2 BASIC25.59■■□□□ 1.696e-75■■□□□ 12.2
YBX3P16989 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.32■■□□□ 1.326e-75■■□□□ 12.2
YBX3P16989 RPS15-211ENST00000592700 1602 ntTSL 221.08■□□□□ 0.976e-75■■□□□ 12.2
YBX3P16989 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.29■□□□□ 0.846e-75■■□□□ 12.2
YBX3P16989 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.616e-75■■□□□ 12.2
YBX3P16989 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.86■□□□□ 0.616e-75■■□□□ 12.2
YBX3P16989 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.86■□□□□ 0.616e-75■■□□□ 12.2
YBX3P16989 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.86■□□□□ 0.616e-75■■□□□ 12.2
YBX3P16989 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.74■□□□□ 0.596e-75■■□□□ 12.2
YBX3P16989 ENO1-205ENST00000492343 826 ntTSL 1 (best)10.56□□□□□ -0.723e-74■□□□□ 10.5
YBX3P16989 ENO1-203ENST00000486051 536 ntTSL 39.02□□□□□ -0.973e-74■□□□□ 10.5
YBX3P16989 ENO1-204ENST00000489867 732 ntTSL 1 (best)21■□□□□ 0.955e-74■□□□□ 10.5
YBX3P16989 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC8.26□□□□□ -1.092e-73■□□□□ 8.7
YBX3P16989 ALB-208ENST00000495173 445 ntTSL 37.74□□□□□ -1.172e-73■□□□□ 8.7
YBX3P16989 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.55□□□□□ -1.22e-73■□□□□ 8.7
YBX3P16989 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.49□□□□□ -1.212e-73■□□□□ 8.7
YBX3P16989 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7□□□□□ -1.292e-73■□□□□ 8.7
YBX3P16989 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.44□□□□□ -1.382e-73■□□□□ 8.7
YBX3P16989 ALB-211ENST00000505649 1509 ntTSL 56.4□□□□□ -1.382e-73■□□□□ 8.7
YBX3P16989 ALB-213ENST00000508932 369 ntTSL 36.33□□□□□ -1.42e-73■□□□□ 8.7
YBX3P16989 ALB-205ENST00000476441 1604 ntTSL 56.18□□□□□ -1.422e-73■□□□□ 8.7
YBX3P16989 ALB-216ENST00000511370 1519 ntTSL 56.15□□□□□ -1.422e-73■□□□□ 8.7
YBX3P16989 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.72□□□□□ -1.492e-73■□□□□ 8.7
YBX3P16989 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.552e-73■□□□□ 8.7
YBX3P16989 ATP5O-208ENST00000491703 2839 ntTSL 214.06□□□□□ -0.165e-73■□□□□ 9.4
YBX3P16989 ATP5O-201ENST00000290299 932 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.195e-73■□□□□ 9.4
YBX3P16989 AP000311.1-201ENST00000429238 1078 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.215e-73■□□□□ 9.4
YBX3P16989 ATP5O-205ENST00000431254 583 ntTSL 213.49□□□□□ -0.255e-73■□□□□ 9.4
YBX3P16989 ATP5O-204ENST00000429064 442 ntTSL 38.82□□□□□ -15e-73■□□□□ 9.4
YBX3P16989 ATP5O-202ENST00000417181 462 ntTSL 37.98□□□□□ -1.135e-73■□□□□ 9.4
YBX3P16989 ATP5O-203ENST00000418933 415 ntTSL 57.98□□□□□ -1.135e-73■□□□□ 9.4
YBX3P16989 EEF1G-202ENST00000524420 557 ntTSL 413.55□□□□□ -0.245e-73■□□□□ 8.8
YBX3P16989 GAPDH-206ENST00000466525 1720 ntTSL 517.18■□□□□ 0.346e-71■■□□□ 11.9
Retrieved 100 of 29,075 protein–RNA pairs in 754.3 ms