Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL14-204ENST00000435633 966 ntTSL 229.05■■■□□ 2.241e-323■■□□□ 12.2
YBX3P16989 EEF1A1-205ENST00000455918 701 ntTSL 227.9■■■□□ 2.061e-323■□□□□ 8.6
YBX3P16989 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.381e-323■■■■□ 20.2
YBX3P16989 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.351e-323■■■■□ 20.2
YBX3P16989 RPL13A-208ENST00000477613 796 ntTSL 523.06■■□□□ 1.281e-323■□□□□ 9
YBX3P16989 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC22.7■■□□□ 1.221e-323■■■□□ 18.6
YBX3P16989 RPL18A-207ENST00000602216 907 ntTSL 222.12■■□□□ 1.131e-323■□□□□ 9.1
YBX3P16989 ALDOA-224ENST00000568435 935 ntTSL 1 (best)21.92■■□□□ 1.11e-323■■□□□ 14.5
YBX3P16989 INS-IGF2-201ENST00000356578 1706 ntTSL 521.74■■□□□ 1.071e-323■■■□□ 18.4
YBX3P16989 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.021e-323■□□□□ 8.6
YBX3P16989 RPL13A-211ENST00000486930 652 ntTSL 320.96■□□□□ 0.951e-323■□□□□ 9
YBX3P16989 APOA2-208ENST00000481413 927 ntTSL 220.63■□□□□ 0.891e-323■■□□□ 12.2
YBX3P16989 RPL13A-206ENST00000476268 1623 ntTSL 320.54■□□□□ 0.881e-323■□□□□ 9
YBX3P16989 ALDOA-223ENST00000567555 554 ntTSL 1 (best)20.54■□□□□ 0.881e-323■■□□□ 11.8
YBX3P16989 RPL13A-209ENST00000479992 850 ntTSL 320.53■□□□□ 0.881e-323■□□□□ 9
YBX3P16989 RPS8-204ENST00000470475 981 ntTSL 220.26■□□□□ 0.831e-323■□□□□ 10
YBX3P16989 RPL13A-202ENST00000467825 660 ntTSL 520.16■□□□□ 0.821e-323■□□□□ 9
YBX3P16989 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.69■□□□□ 0.741e-323■■□□□ 12.2
YBX3P16989 RPL13A-204ENST00000472481 728 ntTSL 219.47■□□□□ 0.711e-323■□□□□ 9
YBX3P16989 RPL14-206ENST00000465280 616 ntTSL 219.31■□□□□ 0.681e-323■■□□□ 13.1
YBX3P16989 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.97■□□□□ 0.631e-323■□□□□ 10.5
YBX3P16989 ALDOA-208ENST00000562679 906 ntTSL 518.63■□□□□ 0.571e-323■□□□□ 11
YBX3P16989 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.561e-323■■□□□ 12.2
YBX3P16989 RPS8-208ENST00000497035 694 ntTSL 318.23■□□□□ 0.511e-323■□□□□ 11
YBX3P16989 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.51e-323■□□□□ 10.6
YBX3P16989 RPL13A-210ENST00000484279 794 ntTSL 518.16■□□□□ 0.51e-323■□□□□ 9
YBX3P16989 RPL14-203ENST00000416518 812 ntTSL 3 BASIC18.07■□□□□ 0.481e-323■■□□□ 12.2
YBX3P16989 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.91■□□□□ 0.461e-323■□□□□ 8.3
YBX3P16989 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.441e-323■■■□□ 18.4
YBX3P16989 ALDOA-216ENST00000566012 553 ntTSL 517.75■□□□□ 0.431e-323■■□□□ 11.7
YBX3P16989 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.381e-323■■■■■ 38.3
YBX3P16989 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.341e-323■■■■■ 39.1
YBX3P16989 APOA2-209ENST00000481511 655 ntTSL 517.11■□□□□ 0.331e-323■■□□□ 12.2
YBX3P16989 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.261e-323■□□□□ 10.6
YBX3P16989 RPL14-208ENST00000479563 794 ntTSL 1 (best)16.5■□□□□ 0.231e-323■■□□□ 12.2
YBX3P16989 RPL19-206ENST00000580333 577 ntTSL 216.06■□□□□ 0.161e-323■■□□□ 13.7
YBX3P16989 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.091e-323■□□□□ 8.6
YBX3P16989 RPL13A-205ENST00000474171 521 ntTSL 215.18■□□□□ 0.021e-323■□□□□ 9
YBX3P16989 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.061e-323■■■■■ 41.7
YBX3P16989 ALDOA-214ENST00000564688 613 ntTSL 514.64□□□□□ -0.071e-323■□□□□ 9.2
YBX3P16989 ALDOA-220ENST00000566846 512 ntTSL 214.62□□□□□ -0.071e-323■■□□□ 11.7
YBX3P16989 ALDOA-210ENST00000563987 586 ntTSL 214.59□□□□□ -0.071e-323■■□□□ 11.7
YBX3P16989 RACK1-218ENST00000508044 554 ntTSL 514.27□□□□□ -0.131e-323■□□□□ 9.7
YBX3P16989 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.27□□□□□ -0.131e-323■□□□□ 8.6
YBX3P16989 EEF1A1-201ENST00000309268 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.161e-323■□□□□ 8.6
YBX3P16989 RPS15-213ENST00000617694 338 ntTSL 314.05□□□□□ -0.161e-323■■□□□ 12.5
YBX3P16989 AC245033.1-201ENST00000562833 880 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.211e-323■■□□□ 12.9
YBX3P16989 RPL13A-203ENST00000468655 407 ntTSL 213.36□□□□□ -0.271e-323■□□□□ 9.4
YBX3P16989 RPL4-209ENST00000565723 408 ntTSL 313.23□□□□□ -0.291e-323■□□□□ 10.3
YBX3P16989 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC12.91□□□□□ -0.341e-323■■■■■ 39.3
YBX3P16989 ALDOA-205ENST00000562168 666 ntTSL 312.86□□□□□ -0.351e-323■■□□□ 11.6
YBX3P16989 APOA2-203ENST00000463812 401 ntTSL 2 BASIC12.62□□□□□ -0.391e-323■■□□□ 12.2
YBX3P16989 EEF2-203ENST00000596417 218 ntTSL 212.53□□□□□ -0.41e-323■□□□□ 8.1
YBX3P16989 ALDOA-218ENST00000566146 365 ntTSL 1 (best)12.34□□□□□ -0.431e-323■□□□□ 8.8
YBX3P16989 EEF1A1-204ENST00000356303 635 ntTSL 212.33□□□□□ -0.441e-323■□□□□ 8.6
YBX3P16989 APOA2-202ENST00000463273 469 ntTSL 1 (best)11.97□□□□□ -0.491e-323■□□□□ 8.4
YBX3P16989 AC132217.1-201ENST00000430034 373 ntTSL 3 BASIC11.61□□□□□ -0.551e-323■■■■□ 24.2
YBX3P16989 FN1-216ENST00000469569 629 ntTSL 211.61□□□□□ -0.551e-323■□□□□ 8.5
YBX3P16989 RPL32-205ENST00000434963 439 ntTSL 510.59□□□□□ -0.711e-323■■□□□ 12
YBX3P16989 HBG1-202ENST00000632727 369 ntTSL 3 BASIC10.56□□□□□ -0.721e-323■□□□□ 9
YBX3P16989 RPL35A-209ENST00000496582 579 ntTSL 29.54□□□□□ -0.881e-323■□□□□ 8.9
YBX3P16989 EEF1A1-209ENST00000495333 958 ntTSL 59.18□□□□□ -0.941e-323■□□□□ 8.6
YBX3P16989 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.051e-323■□□□□ 9
YBX3P16989 HBG2-204ENST00000444587 307 ntTSL 2 BASIC8.26□□□□□ -1.091e-323■□□□□ 8.3
YBX3P16989 EEF1A1-207ENST00000490569 1802 ntTSL 58.24□□□□□ -1.091e-323■□□□□ 8.6
YBX3P16989 FN1-218ENST00000473614 568 ntTSL 28.21□□□□□ -1.11e-323■□□□□ 8.5
YBX3P16989 EEF1A1-206ENST00000488500 792 ntTSL 28.2□□□□□ -1.11e-323■□□□□ 8.6
YBX3P16989 RPL26-203ENST00000578115 569 ntTSL 27.98□□□□□ -1.131e-323■□□□□ 8.1
YBX3P16989 EEF1A1-208ENST00000491404 633 ntTSL 37.88□□□□□ -1.151e-323■□□□□ 8.6
YBX3P16989 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.21e-323■■□□□ 12.2
YBX3P16989 RPL14-209ENST00000481798 604 ntTSL 36.58□□□□□ -1.361e-323■■□□□ 12.2
YBX3P16989 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.381e-323■■□□□ 12.2
YBX3P16989 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.91□□□□□ -1.461e-323■□□□□ 8.6
YBX3P16989 Y_RNA.158-201ENST00000363651 101 ntBASIC5.67□□□□□ -1.51e-323■□□□□ 10.7
YBX3P16989 FN1-215ENST00000461974 571 ntTSL 25.58□□□□□ -1.521e-323■□□□□ 9.6
YBX3P16989 FN1-222ENST00000485567 584 ntTSL 1 (best)5.54□□□□□ -1.521e-323■□□□□ 9.9
YBX3P16989 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.4□□□□□ -1.541e-323■■□□□ 12.2
YBX3P16989 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.96□□□□□ -1.621e-323■□□□□ 8.6
YBX3P16989 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.73□□□□□ -1.651e-323■■□□□ 12.2
YBX3P16989 RPS4X-203ENST00000470671 610 ntTSL 34.29□□□□□ -1.721e-323■□□□□ 10.5
YBX3P16989 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.19□□□□□ -1.741e-323■■□□□ 12.2
YBX3P16989 Y_RNA.33-201ENST00000362591 102 ntBASIC4.12□□□□□ -1.751e-323■□□□□ 9.7
YBX3P16989 RPL14-205ENST00000461368 170 ntTSL 21.37□□□□□ -2.191e-323■■□□□ 13.7
YBX3P16989 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.46□□□□□ -2.481e-323■■■□□ 18.5
YBX3P16989 FN1-223ENST00000490833 699 ntTSL 36.47□□□□□ -1.372e-89■□□□□ 8.7
YBX3P16989 FN1-221ENST00000480737 384 ntTSL 25.78□□□□□ -1.482e-89■□□□□ 8.7
YBX3P16989 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.721e-88■■□□□ 14.3
YBX3P16989 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.431e-88■■□□□ 14.3
YBX3P16989 RPLP0-226ENST00000552461 2591 ntTSL 216.47■□□□□ 0.231e-88■■□□□ 14.3
YBX3P16989 RPLP0-205ENST00000546989 993 ntTSL 5 BASIC14.89□□□□□ -0.031e-88■■□□□ 14.3
YBX3P16989 RPLP0-214ENST00000549098 1106 ntTSL 214.5□□□□□ -0.091e-88■■□□□ 14.3
YBX3P16989 RPLP0-202ENST00000313104 912 ntTSL 1 (best) BASIC14.5□□□□□ -0.091e-88■■□□□ 14.3
YBX3P16989 RPLP0-203ENST00000392514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.231e-88■■□□□ 14.3
YBX3P16989 RPLP0-221ENST00000551258 966 ntTSL 513.25□□□□□ -0.291e-88■■□□□ 14.3
YBX3P16989 RPLP0-206ENST00000546990 770 ntTSL 318.32■□□□□ 0.521e-88■■■□□ 14.6
YBX3P16989 RPLP0-209ENST00000547211 781 ntTSL 314.89□□□□□ -0.031e-88■■□□□ 14.4
YBX3P16989 RPLP0-210ENST00000547475 792 ntTSL 312.33□□□□□ -0.441e-88■■□□□ 14.5
YBX3P16989 RPLP0-207ENST00000547173 864 ntTSL 311.34□□□□□ -0.591e-88■■□□□ 14.5
YBX3P16989 RPLP0-218ENST00000550856 1003 ntTSL 222.62■■□□□ 1.212e-88■■□□□ 13.6
YBX3P16989 RPLP0-204ENST00000546564 844 ntTSL 216.84■□□□□ 0.292e-88■■□□□ 13
Retrieved 100 of 29,075 protein–RNA pairs in 1074.7 ms