Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PRIM1-202ENST00000546761 381 ntTSL 35.93□□□□□ -1.461e-7■□□□□ 8.1
YBX3P16989 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.721e-7■□□□□ 8.1
YBX3P16989 ZNF721-204ENST00000507078 355 ntTSL 53.12□□□□□ -1.911e-7■□□□□ 8.1
YBX3P16989 LDHB-207ENST00000535112 252 ntTSL 513.25□□□□□ -0.292e-29■□□□□ 8.1
YBX3P16989 AC026366.1-201ENST00000488803 879 ntBASIC26.91■■□□□ 1.93e-8■□□□□ 8.1
YBX3P16989 CUL4A-210ENST00000494985 292 ntTSL 529.99■■■□□ 2.397e-9■□□□□ 8.1
YBX3P16989 CUL4A-208ENST00000474116 866 ntTSL 224.65■■□□□ 1.547e-9■□□□□ 8.1
YBX3P16989 MAP1LC3B-208ENST00000570189 1259 ntTSL 1 (best)22.89■■□□□ 1.257e-9■□□□□ 8.1
YBX3P16989 FECH-208ENST00000591977 544 ntTSL 55.4□□□□□ -1.547e-9■□□□□ 8.1
YBX3P16989 RPL26-203ENST00000578115 569 ntTSL 27.98□□□□□ -1.131e-323■□□□□ 8.1
YBX3P16989 GALNT11-212ENST00000482812 580 ntTSL 430.46■■■□□ 2.477e-9■□□□□ 8.1
YBX3P16989 GALNT11-210ENST00000447778 1231 ntTSL 523.16■■□□□ 1.37e-9■□□□□ 8.1
YBX3P16989 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.467e-9■□□□□ 8.1
YBX3P16989 GTF3C2-204ENST00000423998 828 ntTSL 517.36■□□□□ 0.377e-9■□□□□ 8.1
YBX3P16989 GALNT11-204ENST00000423337 580 ntTSL 316.97■□□□□ 0.317e-9■□□□□ 8.1
YBX3P16989 GTF3C2-208ENST00000457748 557 ntTSL 515.23■□□□□ 0.037e-9■□□□□ 8.1
YBX3P16989 GALNT11-208ENST00000434507 2747 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.417e-9■□□□□ 8.1
YBX3P16989 PKP4-207ENST00000457109 520 ntTSL 311.96□□□□□ -0.497e-9■□□□□ 8.1
YBX3P16989 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC9.38□□□□□ -0.917e-9■□□□□ 8.1
YBX3P16989 TCF12-211ENST00000559216 475 ntTSL 49.05□□□□□ -0.967e-9■□□□□ 8.1
YBX3P16989 TCF12-220ENST00000560887 540 ntTSL 48.15□□□□□ -1.17e-9■□□□□ 8.1
YBX3P16989 GALNT11-202ENST00000419245 716 ntTSL 38□□□□□ -1.137e-9■□□□□ 8.1
YBX3P16989 GALNT11-211ENST00000447796 717 ntTSL 36.57□□□□□ -1.367e-9■□□□□ 8.1
YBX3P16989 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.8□□□□□ -1.647e-9■□□□□ 8.1
YBX3P16989 EEF2-203ENST00000596417 218 ntTSL 212.53□□□□□ -0.41e-323■□□□□ 8.1
YBX3P16989 ZFR-204ENST00000505366 1159 ntTSL 1 (best)17.55■□□□□ 0.44e-10■□□□□ 8.1
YBX3P16989 ZFR-203ENST00000505204 552 ntTSL 416.4■□□□□ 0.224e-10■□□□□ 8.1
YBX3P16989 DLGAP5-201ENST00000247191 2973 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.914e-10■□□□□ 8.1
YBX3P16989 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.244e-10■□□□□ 8.1
YBX3P16989 G3BP1-207ENST00000520006 754 ntTSL 528.86■■■□□ 2.214e-10■□□□□ 8
YBX3P16989 G3BP1-212ENST00000522761 1763 ntTSL 220.92■□□□□ 0.944e-10■□□□□ 8
YBX3P16989 G3BP1-213ENST00000523519 535 ntTSL 420.67■□□□□ 0.94e-10■□□□□ 8
YBX3P16989 G3BP1-209ENST00000520578 530 ntTSL 318.47■□□□□ 0.554e-10■□□□□ 8
YBX3P16989 G3BP1-203ENST00000507878 577 ntTSL 415.98■□□□□ 0.154e-10■□□□□ 8
YBX3P16989 G3BP1-204ENST00000517947 558 ntTSL 415.57■□□□□ 0.084e-10■□□□□ 8
YBX3P16989 G3BP1-210ENST00000522367 580 ntTSL 315.57■□□□□ 0.084e-10■□□□□ 8
YBX3P16989 G3BP1-211ENST00000522666 783 ntTSL 315.19■□□□□ 0.024e-10■□□□□ 8
YBX3P16989 G3BP1-208ENST00000520177 2700 ntTSL 1 (best)15.04■□□□□ -04e-10■□□□□ 8
YBX3P16989 G3BP1-205ENST00000518726 869 ntTSL 1 (best)14.01□□□□□ -0.174e-10■□□□□ 8
YBX3P16989 G3BP1-206ENST00000519832 1173 ntTSL 1 (best)12.88□□□□□ -0.354e-10■□□□□ 8
YBX3P16989 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.364e-10■□□□□ 8
YBX3P16989 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC9.03□□□□□ -0.964e-10■□□□□ 8
YBX3P16989 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.984e-10■□□□□ 8
YBX3P16989 INTS7-205ENST00000460867 550 ntTSL 55.98□□□□□ -1.454e-10■□□□□ 8
YBX3P16989 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.89□□□□□ -2.114e-10■□□□□ 8
YBX3P16989 ATP6V1B2-203ENST00000520830 649 ntTSL 323.63■■□□□ 1.372e-11■□□□□ 8
YBX3P16989 PTPRS-207ENST00000589851 1270 ntTSL 520.45■□□□□ 0.862e-11■□□□□ 8
YBX3P16989 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.35■■□□□ 1.172e-11■□□□□ 8
YBX3P16989 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.912e-11■□□□□ 8
YBX3P16989 RHD-208ENST00000564398 1441 ntTSL 1 (best)19.3■□□□□ 0.682e-11■□□□□ 8
YBX3P16989 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC19.3■□□□□ 0.682e-11■□□□□ 8
YBX3P16989 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.86■□□□□ 0.612e-11■□□□□ 8
YBX3P16989 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.91■□□□□ 0.462e-11■□□□□ 8
YBX3P16989 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.342e-11■□□□□ 8
YBX3P16989 RHD-205ENST00000423253 951 ntTSL 515.92■□□□□ 0.142e-11■□□□□ 8
YBX3P16989 RHD-210ENST00000622561 3007 ntTSL 5 BASIC11.3□□□□□ -0.62e-11■□□□□ 8
YBX3P16989 RHD-201ENST00000328664 2930 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.62e-11■□□□□ 8
YBX3P16989 WDR45-213ENST00000465382 811 ntTSL 518.31■□□□□ 0.521e-12■□□□□ 8
YBX3P16989 WDR45-223ENST00000480412 437 ntTSL 218.1■□□□□ 0.491e-12■□□□□ 8
YBX3P16989 WDR45-221ENST00000475977 794 ntTSL 315.53■□□□□ 0.081e-12■□□□□ 8
YBX3P16989 KRT18-205ENST00000548496 695 ntTSL 215.34■□□□□ 0.051e-12■□□□□ 8
YBX3P16989 LDHB-205ENST00000470280 710 ntTSL 213.83□□□□□ -0.25e-38■□□□□ 8
YBX3P16989 CLTC-211ENST00000579815 609 ntTSL 57.05□□□□□ -1.286e-14■□□□□ 8
YBX3P16989 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.9■□□□□ 0.33e-15■□□□□ 8
YBX3P16989 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.613e-15■□□□□ 8
YBX3P16989 USP10-210ENST00000563892 570 ntTSL 322.46■■□□□ 1.192e-16■□□□□ 8
YBX3P16989 KPNB1-209ENST00000580158 603 ntTSL 29.06□□□□□ -0.965e-19■□□□□ 8
YBX3P16989 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.22■■□□□ 1.791e-6■□□□□ 8
YBX3P16989 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.731e-6■□□□□ 8
YBX3P16989 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.43■□□□□ 0.541e-6■□□□□ 8
YBX3P16989 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.23■□□□□ 0.511e-6■□□□□ 8
YBX3P16989 SCARB1-205ENST00000538291 5527 ntTSL 517.19■□□□□ 0.341e-6■□□□□ 8
YBX3P16989 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.33■□□□□ 0.21e-6■□□□□ 8
YBX3P16989 SCARB1-204ENST00000535005 1845 ntTSL 1 (best)14.92□□□□□ -0.021e-6■□□□□ 8
YBX3P16989 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-6■□□□□ 8
Retrieved 75 of 29,075 protein–RNA pairs in 783.5 ms