Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRAP1-211ENST00000574941 558 ntTSL 425.26■■□□□ 1.633e-12■■■■■ 39.8
YBX3P16989 TRAP1-206ENST00000571538 587 ntTSL 412.56□□□□□ -0.43e-12■■■■■ 39.8
YBX3P16989 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.135e-8■■■■■ 39.7
YBX3P16989 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.692e-8■■■■■ 39.6
YBX3P16989 FBXO6-202ENST00000449067 928 ntTSL 317.97■□□□□ 0.472e-8■■■■■ 39.6
YBX3P16989 HPCAL1-205ENST00000423674 586 ntTSL 430.35■■■□□ 2.455e-7■■■■■ 39.5
YBX3P16989 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.765e-7■■■■■ 39.5
YBX3P16989 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.615e-7■■■■■ 39.5
YBX3P16989 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.611e-9■■■■■ 39.5
YBX3P16989 APIP-202ENST00000527830 1042 ntTSL 223.14■■□□□ 1.291e-9■■■■■ 39.5
YBX3P16989 APIP-203ENST00000532428 4583 ntTSL 1 (best)5.52□□□□□ -1.531e-9■■■■■ 39.5
YBX3P16989 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 35e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-210ENST00000531571 1535 ntTSL 533.74■■■□□ 2.995e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC22.27■■□□□ 1.165e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-207ENST00000529281 1310 ntTSL 221.43■■□□□ 1.025e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-203ENST00000527260 808 ntTSL 58.3□□□□□ -1.085e-14■■■■■ 39.4
YBX3P16989 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC12.91□□□□□ -0.341e-323■■■■■ 39.3
YBX3P16989 GPT2-204ENST00000562801 2092 ntTSL 217.48■□□□□ 0.391e-8■■■■■ 39.3
YBX3P16989 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.341e-323■■■■■ 39.1
YBX3P16989 SLC44A2-207ENST00000588409 589 ntTSL 412.73□□□□□ -0.372e-13■■■■■ 38.9
YBX3P16989 PRDX6-203ENST00000470017 859 ntTSL 29.39□□□□□ -0.911e-31■■■■■ 38.9
YBX3P16989 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.974e-32■■■■■ 38.9
YBX3P16989 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.65■■□□□ 1.063e-21■■■■■ 38.8
YBX3P16989 PSMD5-206ENST00000476949 382 ntTSL 219.93■□□□□ 0.783e-21■■■■■ 38.8
YBX3P16989 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.62■□□□□ 0.573e-21■■■■■ 38.8
YBX3P16989 PSMD5-205ENST00000471789 567 ntTSL 216.22■□□□□ 0.193e-21■■■■■ 38.8
YBX3P16989 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.49■□□□□ 0.232e-13■■■■■ 38.7
YBX3P16989 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.52e-13■■■■■ 38.7
YBX3P16989 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.52e-13■■■■■ 38.7
YBX3P16989 TFE3-203ENST00000487451 1058 ntTSL 322.92■■□□□ 1.268e-10■■■■■ 38.6
YBX3P16989 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.18e-10■■■■■ 38.6
YBX3P16989 TFE3-204ENST00000493583 3279 ntTSL 213.96□□□□□ -0.188e-10■■■■■ 38.6
YBX3P16989 TFE3-202ENST00000481606 439 ntTSL 27.82□□□□□ -1.168e-10■■■■■ 38.6
YBX3P16989 EXT2-209ENST00000532479 580 ntTSL 424.24■■□□□ 1.476e-12■■■■■ 38.5
YBX3P16989 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.381e-323■■■■■ 38.3
YBX3P16989 SRSF7-206ENST00000431066 1847 ntTSL 512.95□□□□□ -0.342e-23■■■■■ 38.2
YBX3P16989 STK11-203ENST00000585748 746 ntTSL 316.39■□□□□ 0.214e-12■■■■■ 38.2
YBX3P16989 HMGB2P1-201ENST00000591146 634 ntBASIC5.13□□□□□ -1.594e-12■■■■■ 38.2
YBX3P16989 NSA2-203ENST00000514918 645 ntTSL 215.7■□□□□ 0.16e-8■■■■■ 38.1
YBX3P16989 NSA2-202ENST00000513356 797 ntTSL 310.55□□□□□ -0.726e-8■■■■■ 38.1
YBX3P16989 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.516e-9■■■■■ 38.1
YBX3P16989 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-7■■■■■ 38
YBX3P16989 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.244e-7■■■■■ 38
YBX3P16989 NSA2-201ENST00000296802 1199 ntTSL 5 BASIC14.71□□□□□ -0.056e-8■■■■■ 38
YBX3P16989 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.086e-8■■■■■ 38
YBX3P16989 HDLBP-211ENST00000425989 530 ntTSL 511.12□□□□□ -0.633e-12■■■■■ 38
YBX3P16989 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.53■■□□□ 1.363e-7■■■■■ 37.9
YBX3P16989 RILPL1-201ENST00000340724 2389 ntTSL 515.05■□□□□ -03e-7■■■■■ 37.9
YBX3P16989 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.033e-7■■■■■ 37.9
YBX3P16989 MIR3605-201ENST00000583214 100 ntBASIC2.99□□□□□ -1.931e-9■■■■■ 37.7
YBX3P16989 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.11■□□□□ 0.816e-7■■■■■ 37.7
YBX3P16989 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.56□□□□□ -0.082e-6■■■■■ 37.5
YBX3P16989 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.67□□□□□ -0.222e-6■■■■■ 37.5
YBX3P16989 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.292e-6■■■■■ 37.5
YBX3P16989 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.75■■■□□ 2.195e-29■■■■■ 37.3
YBX3P16989 NSA2-204ENST00000515524 448 ntTSL 26.87□□□□□ -1.314e-12■■■■■ 37.2
YBX3P16989 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.633e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.7■■□□□ 1.223e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-206ENST00000494378 1869 ntTSL 222.45■■□□□ 1.193e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-207ENST00000612859 2920 ntTSL 510.97□□□□□ -0.653e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-203ENST00000461994 395 ntTSL 37.18□□□□□ -1.263e-11■■■■■ 37.2
YBX3P16989 ZC3H11A-206ENST00000453771 1892 ntTSL 512.68□□□□□ -0.385e-11■■■■■ 36.9
YBX3P16989 NFIC-208ENST00000589537 977 ntTSL 222■■□□□ 1.112e-6■■■■■ 36.9
YBX3P16989 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.34■■□□□ 1.653e-10■■■■■ 36.9
YBX3P16989 SUPT4H1-205ENST00000581166 1401 ntTSL 218.54■□□□□ 0.563e-10■■■■■ 36.9
YBX3P16989 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.533e-10■■■■■ 36.9
YBX3P16989 ANXA2-234ENST00000560495 567 ntTSL 416.26■□□□□ 0.194e-16■■■■■ 36.8
YBX3P16989 ANXA2-211ENST00000558169 557 ntTSL 416.26■□□□□ 0.194e-16■■■■■ 36.8
YBX3P16989 ANXA2-236ENST00000560936 908 ntTSL 214.07□□□□□ -0.164e-16■■■■■ 36.8
YBX3P16989 ANXA2-209ENST00000557986 733 ntTSL 511.83□□□□□ -0.524e-16■■■■■ 36.8
YBX3P16989 ANXA2-235ENST00000560546 574 ntTSL 28.09□□□□□ -1.114e-16■■■■■ 36.8
YBX3P16989 SZRD1-206ENST00000475078 490 ntTSL 419.69■□□□□ 0.747e-12■■■■■ 36.7
YBX3P16989 SZRD1-208ENST00000476423 567 ntTSL 411.89□□□□□ -0.517e-12■■■■■ 36.7
YBX3P16989 RAB35-204ENST00000540803 551 ntTSL 225.3■■□□□ 1.647e-12■■■■■ 36.7
YBX3P16989 RAB35-206ENST00000544304 2449 ntTSL 221.85■■□□□ 1.097e-12■■■■■ 36.7
YBX3P16989 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.65■□□□□ 0.97e-12■■■■■ 36.7
YBX3P16989 RAB35-203ENST00000538903 643 ntTSL 319.97■□□□□ 0.797e-12■■■■■ 36.7
YBX3P16989 RAB35-205ENST00000543364 578 ntTSL 319.88■□□□□ 0.777e-12■■■■■ 36.7
YBX3P16989 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.317e-12■■■■■ 36.7
YBX3P16989 PLD3-210ENST00000480030 903 ntTSL 213.34□□□□□ -0.277e-12■■■■■ 36.7
YBX3P16989 SRSF7-208ENST00000443213 1903 ntTSL 512.94□□□□□ -0.342e-23■■■■■ 36.7
YBX3P16989 SRSF7-205ENST00000425941 1944 ntTSL 512.14□□□□□ -0.472e-23■■■■■ 36.7
YBX3P16989 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-23■■■■■ 36.7
YBX3P16989 SRSF7-209ENST00000446327 2453 ntTSL 2 BASIC11.55□□□□□ -0.562e-23■■■■■ 36.7
YBX3P16989 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC10.21□□□□□ -0.772e-23■■■■■ 36.7
YBX3P16989 SRSF7-204ENST00000425778 2857 ntTSL 29.2□□□□□ -0.942e-23■■■■■ 36.7
YBX3P16989 RAD51D-213ENST00000587977 1732 ntTSL 226.16■■□□□ 1.783e-11■■■■■ 36.5
YBX3P16989 RAD51D-211ENST00000586210 1194 ntTSL 1 (best)25.61■■□□□ 1.693e-11■■■■■ 36.5
YBX3P16989 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.54■■□□□ 1.23e-11■■■■■ 36.5
YBX3P16989 AC004223.3-202ENST00000591723 676 ntTSL 521.76■■□□□ 1.073e-11■■■■■ 36.5
YBX3P16989 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.25■□□□□ 0.993e-11■■■■■ 36.5
YBX3P16989 RAD51D-209ENST00000586044 1571 ntTSL 1 (best)21.1■□□□□ 0.973e-11■■■■■ 36.5
YBX3P16989 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.62■□□□□ 0.893e-11■■■■■ 36.5
YBX3P16989 RAD51D-216ENST00000588594 1409 ntTSL 219.93■□□□□ 0.783e-11■■■■■ 36.5
YBX3P16989 AC004223.3-203ENST00000592181 787 ntAPPRIS ALT2 TSL 518.91■□□□□ 0.623e-11■■■■■ 36.5
YBX3P16989 RAD51D-221ENST00000592577 762 ntTSL 516.86■□□□□ 0.293e-11■■■■■ 36.5
YBX3P16989 RAD51D-212ENST00000587405 676 ntTSL 516.49■□□□□ 0.233e-11■■■■■ 36.5
YBX3P16989 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.9■□□□□ 0.143e-11■■■■■ 36.5
YBX3P16989 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.123e-11■■■■■ 36.5
YBX3P16989 RAD51D-215ENST00000588372 2214 ntTSL 512.74□□□□□ -0.373e-11■■■■■ 36.5
Retrieved 100 of 29,075 protein–RNA pairs in 806.1 ms