RNA–Protein interactions for RNA: ENST00000639824.1

HNRNPU-221, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5

Gene HNRNPU, Length 1,450 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-221	ENST00000639824	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.42	□□□□□ -0.42	3e-39	■■■□□ 16.7
HNRNPU-221	ENST00000639824	PPIG	Q13427	754 aa	Known RBP eCLIP	11.09	□□□□□ -0.63	7e-37	■□□□□ 9.5
HNRNPU-221	ENST00000639824	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.25	□□□□□ -0.61	3e-25	■■■□□ 16.6
HNRNPU-221	ENST00000639824	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.74	□□□□□ -0.37	1e-21	■■□□□ 14
HNRNPU-221	ENST00000639824	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.71	□□□□□ -0.38	5e-21	■■□□□ 13.3
HNRNPU-221	ENST00000639824	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.67	□□□□□ -0.54	1e-20	■□□□□ 10
HNRNPU-221	ENST00000639824	PUM1	Q14671	1186 aa	Known RBP eCLIP	10.68	□□□□□ -0.7	3e-20	■□□□□ 9.3
HNRNPU-221	ENST00000639824	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.39	□□□□□ -0.75	1e-15	■■□□□ 11.6
HNRNPU-221	ENST00000639824	U2AF2	P26368	475 aa	Known RBP eCLIP	13.1	□□□□□ -0.31	3e-15	■■■■■ 38.3
HNRNPU-221	ENST00000639824	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.93	□□□□□ -0.18	4e-15	■■■■□ 21.7
HNRNPU-221	ENST00000639824	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	17.82	■□□□□ 0.44	1e-14	■■□□□ 12.6
HNRNPU-221	ENST00000639824	FXR2	P51116	673 aa	Known RBP eCLIP	15.24	■□□□□ 0.03	6e-14	■□□□□ 9.5
HNRNPU-221	ENST00000639824	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.55	□□□□□ -0.4	8e-14	■■■□□ 15.4
HNRNPU-221	ENST00000639824	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.06	□□□□□ -0.32	1e-13	■□□□□ 10.1
HNRNPU-221	ENST00000639824	RPS3	P23396	243 aa	Known RBP eCLIP	11.23	□□□□□ -0.61	3e-13	■□□□□ 10.2
HNRNPU-221	ENST00000639824	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	4e-13	■■□□□ 13
HNRNPU-221	ENST00000639824	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.12	□□□□□ -0.79	5e-13	■■■■■ 39
HNRNPU-221	ENST00000639824	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.41	□□□□□ -0.26	1e-12	■□□□□ 10.1
HNRNPU-221	ENST00000639824	FMR1	Q06787	632 aa	Known RBP eCLIP	12.78	□□□□□ -0.36	1e-11	■□□□□ 9.3
HNRNPU-221	ENST00000639824	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.79	□□□□□ -0.36	1e-11	■□□□□ 9.3
HNRNPU-221	ENST00000639824	AQR	O60306	1485 aa	Known RBP eCLIP	16.92	■□□□□ 0.3	1e-11	■■■■□ 26.6
HNRNPU-221	ENST00000639824	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.25	□□□□□ -0.61	1e-10	■■□□□ 12.3
HNRNPU-221	ENST00000639824	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.2	□□□□□ -0.78	2e-9	■■■□□ 15
HNRNPU-221	ENST00000639824	CDC40	O60508	579 aa	Known RBP eCLIP	10.33	□□□□□ -0.76	2e-9	■□□□□ 8.3
HNRNPU-221	ENST00000639824	EIF3H	O15372	352 aa	Known RBP eCLIP	12.04	□□□□□ -0.48	2e-9	■■□□□ 12.9
HNRNPU-221	ENST00000639824	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.37	□□□□□ -0.59	5e-9	■□□□□ 9.5
HNRNPU-221	ENST00000639824	FXR1	P51114	621 aa	Known RBP eCLIP	12.61	□□□□□ -0.39	8e-9	■□□□□ 10
HNRNPU-221	ENST00000639824	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.4	□□□□□ -0.58	9e-9	■■■■■ 38.6
HNRNPU-221	ENST00000639824	SUB1	P53999	127 aa	Known RBP eCLIP	9.22	□□□□□ -0.93	1e-8	■■■□□ 16.8
HNRNPU-221	ENST00000639824	TIAL1	Q01085	375 aa	Known RBP eCLIP	11.25	□□□□□ -0.61	1e-8	■■■□□ 16.7
HNRNPU-221	ENST00000639824	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.23	□□□□□ -0.45	2e-8	■■■■■ 40.2
HNRNPU-221	ENST00000639824	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.71	□□□□□ -0.53	2e-8	■□□□□ 8.3
HNRNPU-221	ENST00000639824	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	8.59	□□□□□ -1.03	3e-8	■■■■□ 23.2
HNRNPU-221	ENST00000639824	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	7e-8	■■□□□ 13.7
HNRNPU-221	ENST00000639824	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.67	□□□□□ -0.54	2e-7	■■■■□ 24.5
HNRNPU-221	ENST00000639824	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	11.76	□□□□□ -0.53	2e-7	■■■□□ 16
HNRNPU-221	ENST00000639824	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.3	□□□□□ -0.6	2e-7	■■□□□ 14.4
HNRNPU-221	ENST00000639824	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.28	□□□□□ -0.44	4e-7	■■■■■ 58.1
HNRNPU-221	ENST00000639824	SRSF1	Q07955	248 aa	Known RBP eCLIP	8.54	□□□□□ -1.04	4e-7	■■□□□ 13.8
HNRNPU-221	ENST00000639824	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.73	□□□□□ -0.53	5e-7	■□□□□ 8.1
HNRNPU-221	ENST00000639824	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.06	□□□□□ -0.48	7e-7	■■■■■ 86.2
HNRNPU-221	ENST00000639824	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.49	□□□□□ -0.57	1e-6	■■■■□ 22.7
HNRNPU-221	ENST00000639824	AGGF1	Q8N302	714 aa	eCLIP	11.62	□□□□□ -0.55	1e-6	■■■□□ 16
HNRNPU-221	ENST00000639824	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	1e-6	■■■□□ 18.4
HNRNPU-221	ENST00000639824	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.74	□□□□□ -0.53	2e-6	■■■■■ 53.1
HNRNPU-221	ENST00000639824	WDR43	Q15061	677 aa	Known RBP eCLIP	15.04	■□□□□ -0	2e-6	■■□□□ 13.5
HNRNPU-221	ENST00000639824	FUS	P35637	526 aa	Known RBP eCLIP	7.22	□□□□□ -1.25	2e-6	■□□□□ 8.5
HNRNPU-221	ENST00000639824	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.52	□□□□□ -0.56	2e-6	■□□□□ 8.9
HNRNPU-221	ENST00000639824	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.08	□□□□□ -0.32	3e-6	■□□□□ 9.2
HNRNPU-221	ENST00000639824	TIA1	P31483	386 aa	Known RBP eCLIP	10.92	□□□□□ -0.66	3e-6	■■■□□ 15.8

Retrieved 50 of 50 RNA–protein pairs in 9.1 ms