RNA–Protein interactions for RNA: ENST00000639599.1

TARDBP-231, Transcript of TAR DNA binding protein, human

TSL 5

Gene TARDBP, Length 1,283 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TARDBP-231	ENST00000639599	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	5e-8	■■■■■ 204.6
TARDBP-231	ENST00000639599	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	12.5	□□□□□ -0.41	2e-9	■■■■■ 39
TARDBP-231	ENST00000639599	DDX3X	O00571	662 aa	Known RBP eCLIP	14.66	□□□□□ -0.06	1e-28	■■■■■ 35.7
TARDBP-231	ENST00000639599	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	16.87	■□□□□ 0.29	8e-12	■■■■■ 35.2
TARDBP-231	ENST00000639599	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	24.08	■■□□□ 1.45	1e-7	■■■■■ 34.9
TARDBP-231	ENST00000639599	SMNDC1	O75940	238 aa	Known RBP eCLIP	13.36	□□□□□ -0.27	2e-8	■■■■■ 29.2
TARDBP-231	ENST00000639599	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	14.27	□□□□□ -0.13	7e-6	■■■■■ 27.5
TARDBP-231	ENST00000639599	TARDBP	Q13148	414 aa	Known RBP eCLIP	15.03	■□□□□ -0	1e-13	■■■■■ 26.9
TARDBP-231	ENST00000639599	RBM22	Q9NW64	420 aa	Known RBP eCLIP	14.62	□□□□□ -0.07	1e-7	■■■■□ 22.6
TARDBP-231	ENST00000639599	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	13.92	□□□□□ -0.18	3e-6	■■■■□ 22.6
TARDBP-231	ENST00000639599	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	15.53	■□□□□ 0.08	1e-7	■■■■□ 22.4
TARDBP-231	ENST00000639599	DDX6	P26196	483 aa	Known RBP eCLIP	15.83	■□□□□ 0.12	1e-7	■■■■□ 21
TARDBP-231	ENST00000639599	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.38	□□□□□ -0.59	2e-10	■■■□□ 18.4
TARDBP-231	ENST00000639599	RBM15	Q96T37	977 aa	Known RBP eCLIP	14.76	□□□□□ -0.05	9e-7	■■■□□ 18.3
TARDBP-231	ENST00000639599	GTF2F1	P35269	517 aa	Known RBP eCLIP	16.59	■□□□□ 0.25	7e-26	■■■□□ 18.2
TARDBP-231	ENST00000639599	NCBP2	P52298	156 aa	Known RBP eCLIP	13.32	□□□□□ -0.28	1e-12	■■■□□ 17.9
TARDBP-231	ENST00000639599	TIA1	P31483	386 aa	Known RBP eCLIP	13.32	□□□□□ -0.28	2e-7	■■■□□ 17.4
TARDBP-231	ENST00000639599	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	22.93	■■□□□ 1.26	1e-6	■■■□□ 15.4
TARDBP-231	ENST00000639599	U2AF1	Q01081	240 aa	Known RBP eCLIP	19.62	■□□□□ 0.73	3e-7	■■■□□ 15.3
TARDBP-231	ENST00000639599	UPF1	Q92900	1129 aa	Known RBP eCLIP	21.68	■■□□□ 1.06	2e-11	■■■□□ 15.1
TARDBP-231	ENST00000639599	AQR	O60306	1485 aa	Known RBP eCLIP	26.55	■■□□□ 1.84	2e-7	■■□□□ 14.3
TARDBP-231	ENST00000639599	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	20.14	■□□□□ 0.81	3e-7	■■□□□ 13.6
TARDBP-231	ENST00000639599	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	22.85	■■□□□ 1.25	2e-9	■■□□□ 13.4
TARDBP-231	ENST00000639599	PRPF4	O43172	522 aa	Known RBP eCLIP	14.07	□□□□□ -0.16	2e-14	■■□□□ 12.4
TARDBP-231	ENST00000639599	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	13.17	□□□□□ -0.3	2e-21	■■□□□ 12.4
TARDBP-231	ENST00000639599	HNRNPM	P52272	730 aa	Known RBP eCLIP	23.52	■■□□□ 1.36	7e-7	■■□□□ 12.4
TARDBP-231	ENST00000639599	CDC40	O60508	579 aa	Known RBP eCLIP	13.77	□□□□□ -0.21	5e-6	■■□□□ 12.3
TARDBP-231	ENST00000639599	GRSF1	Q12849	480 aa	Known RBP eCLIP	15.81	■□□□□ 0.12	1e-11	■■□□□ 12.1
TARDBP-231	ENST00000639599	EIF4G2	P78344	907 aa	Known RBP eCLIP	20.22	■□□□□ 0.83	8e-11	■■□□□ 12.1
TARDBP-231	ENST00000639599	FUS	P35637	526 aa	Known RBP eCLIP	10	□□□□□ -0.81	3e-10	■■□□□ 12.1
TARDBP-231	ENST00000639599	ZC3H11A	O75152	810 aa	Known RBP eCLIP	16.47	■□□□□ 0.23	1e-7	■■□□□ 12
TARDBP-231	ENST00000639599	LSM11	P83369	360 aa	Known RBP eCLIP	12.85	□□□□□ -0.35	3e-9	■■□□□ 11.9
TARDBP-231	ENST00000639599	TIAL1	Q01085	375 aa	Known RBP eCLIP	13.75	□□□□□ -0.21	6e-7	■■□□□ 11.7
TARDBP-231	ENST00000639599	FXR2	P51116	673 aa	Known RBP eCLIP	16.15	■□□□□ 0.18	2e-7	■■□□□ 11.5
TARDBP-231	ENST00000639599	SRSF1	Q07955	248 aa	Known RBP eCLIP	14.29	□□□□□ -0.12	3e-8	■■□□□ 11.4
TARDBP-231	ENST00000639599	WRN	Q14191	1432 aa	Predicted RBP eCLIP	26.08	■■□□□ 1.77	6e-7	■□□□□ 11.3
TARDBP-231	ENST00000639599	KHSRP	Q92945	711 aa	Known RBP eCLIP	16.63	■□□□□ 0.25	1e-9	■□□□□ 11
TARDBP-231	ENST00000639599	RPS3	P23396	243 aa	Known RBP eCLIP	14.05	□□□□□ -0.16	3e-8	■□□□□ 11
TARDBP-231	ENST00000639599	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	17.26	■□□□□ 0.35	1e-6	■□□□□ 10.9
TARDBP-231	ENST00000639599	SF3B4	Q15427	424 aa	Known RBP eCLIP	13.54	□□□□□ -0.24	4e-7	■□□□□ 10.8
TARDBP-231	ENST00000639599	U2AF2	P26368	475 aa	Known RBP eCLIP	16.07	■□□□□ 0.16	2e-10	■□□□□ 10.5
TARDBP-231	ENST00000639599	ZRANB2	O95218	330 aa	Known RBP eCLIP	14.38	□□□□□ -0.11	5e-13	■□□□□ 10.2
TARDBP-231	ENST00000639599	G3BP1	Q13283	466 aa	Known RBP eCLIP	18.13	■□□□□ 0.49	5e-9	■□□□□ 10.1
TARDBP-231	ENST00000639599	SUB1	P53999	127 aa	Known RBP eCLIP	10.85	□□□□□ -0.67	1e-11	■□□□□ 9.4
TARDBP-231	ENST00000639599	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	14.55	□□□□□ -0.08	1e-6	■□□□□ 9.2
TARDBP-231	ENST00000639599	ZNF622	Q969S3	477 aa	Known RBP eCLIP	19.56	■□□□□ 0.72	3e-23	■□□□□ 9.1
TARDBP-231	ENST00000639599	PPIG	Q13427	754 aa	Known RBP eCLIP	17.34	■□□□□ 0.37	6e-7	■□□□□ 8.8
TARDBP-231	ENST00000639599	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	17.77	■□□□□ 0.44	2e-12	■□□□□ 8.7
TARDBP-231	ENST00000639599	ILF3	Q12906	894 aa	Known RBP eCLIP	14.74	□□□□□ -0.05	6e-6	■□□□□ 8.6
TARDBP-231	ENST00000639599	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	18.29	■□□□□ 0.52	3e-13	■□□□□ 8.3
TARDBP-231	ENST00000639599	YBX3	P16989	372 aa	Known RBP eCLIP	20.01	■□□□□ 0.79	8e-13	■□□□□ 8.1

Retrieved 51 of 51 RNA–protein pairs in 10.4 ms