RNA–Protein interactions for RNA: ENST00000639083.1

TARDBP-230, Transcript of TAR DNA binding protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TARDBP, Length 2,269 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-230ENST00000639083 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.57□□□□□ -0.725e-8■■■■■ 204.6
TARDBP-230ENST00000639083 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.44□□□□□ -1.062e-9■■■■■ 39
TARDBP-230ENST00000639083 DDX3XO00571 662 aaKnown RBP eCLIP11.7□□□□□ -0.541e-28■■■■■ 35.7
TARDBP-230ENST00000639083 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.09□□□□□ -0.638e-12■■■■■ 35.2
TARDBP-230ENST00000639083 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.54■□□□□ 0.081e-7■■■■■ 34.9
TARDBP-230ENST00000639083 SMNDC1O75940 238 aaKnown RBP eCLIP10.34□□□□□ -0.752e-8■■■■■ 29.2
TARDBP-230ENST00000639083 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.7□□□□□ -0.77e-6■■■■■ 27.5
TARDBP-230ENST00000639083 RBM22Q9NW64 420 aaKnown RBP eCLIP11.01□□□□□ -0.651e-7■■■■□ 22.6
TARDBP-230ENST00000639083 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.75□□□□□ -0.853e-6■■■■□ 22.6
TARDBP-230ENST00000639083 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.71□□□□□ -0.531e-7■■■■□ 22.4
TARDBP-230ENST00000639083 DDX6P26196 483 aaKnown RBP eCLIP10.76□□□□□ -0.691e-7■■■■□ 21
TARDBP-230ENST00000639083 TARDBPQ13148 414 aaKnown RBP eCLIP10.07□□□□□ -0.82e-18■■■■□ 20.4
TARDBP-230ENST00000639083 SRSF7Q16629 238 aaKnown RBP eCLIP9.14□□□□□ -0.952e-10■■■□□ 18.4
TARDBP-230ENST00000639083 RBM15Q96T37 977 aaKnown RBP eCLIP11.24□□□□□ -0.619e-7■■■□□ 18.3
TARDBP-230ENST00000639083 GTF2F1P35269 517 aaKnown RBP eCLIP11.93□□□□□ -0.57e-26■■■□□ 18.2
TARDBP-230ENST00000639083 NCBP2P52298 156 aaKnown RBP eCLIP10.21□□□□□ -0.771e-12■■■□□ 17.9
TARDBP-230ENST00000639083 TIA1P31483 386 aaKnown RBP eCLIP10.37□□□□□ -0.752e-7■■■□□ 17.4
TARDBP-230ENST00000639083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.01■□□□□ 0.151e-6■■■□□ 15.4
TARDBP-230ENST00000639083 U2AF1Q01081 240 aaKnown RBP eCLIP14.21□□□□□ -0.143e-7■■■□□ 15.3
TARDBP-230ENST00000639083 UPF1Q92900 1129 aaKnown RBP eCLIP12.11□□□□□ -0.472e-11■■■□□ 15.1
TARDBP-230ENST00000639083 AQRO60306 1485 aaKnown RBP eCLIP16.53■□□□□ 0.242e-7■■□□□ 14.3
TARDBP-230ENST00000639083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.243e-7■■□□□ 13.6
TARDBP-230ENST00000639083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.31■□□□□ 0.042e-9■■□□□ 13.4
TARDBP-230ENST00000639083 PRPF4O43172 522 aaKnown RBP eCLIP11.06□□□□□ -0.642e-14■■□□□ 12.4
TARDBP-230ENST00000639083 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.36□□□□□ -0.752e-21■■□□□ 12.4
TARDBP-230ENST00000639083 HNRNPMP52272 730 aaKnown RBP eCLIP15.59■□□□□ 0.097e-7■■□□□ 12.4
TARDBP-230ENST00000639083 CDC40O60508 579 aaKnown RBP eCLIP9.8□□□□□ -0.845e-6■■□□□ 12.3
TARDBP-230ENST00000639083 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.54□□□□□ -0.561e-11■■□□□ 11.7
TARDBP-230ENST00000639083 TIAL1Q01085 375 aaKnown RBP eCLIP10.79□□□□□ -0.686e-7■■□□□ 11.7
TARDBP-230ENST00000639083 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.462e-7■■□□□ 11.5
TARDBP-230ENST00000639083 SRSF1Q07955 248 aaKnown RBP eCLIP8.58□□□□□ -1.044e-8■□□□□ 11.3
TARDBP-230ENST00000639083 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.396e-7■□□□□ 11.3
TARDBP-230ENST00000639083 EIF4G2P78344 907 aaKnown RBP eCLIP15.24■□□□□ 0.031e-10■□□□□ 11
TARDBP-230ENST00000639083 RPS3P23396 243 aaKnown RBP eCLIP10.67□□□□□ -0.73e-8■□□□□ 11
TARDBP-230ENST00000639083 SF3B4Q15427 424 aaKnown RBP eCLIP9.33□□□□□ -0.922e-7■□□□□ 10.4
TARDBP-230ENST00000639083 KHSRPQ92945 711 aaKnown RBP eCLIP11.33□□□□□ -0.61e-9■□□□□ 10.4
TARDBP-230ENST00000639083 ZRANB2O95218 330 aaKnown RBP eCLIP11.62□□□□□ -0.555e-13■□□□□ 10.2
TARDBP-230ENST00000639083 G3BP1Q13283 466 aaKnown RBP eCLIP13.22□□□□□ -0.295e-9■□□□□ 10.1
TARDBP-230ENST00000639083 U2AF2P26368 475 aaKnown RBP eCLIP12.5□□□□□ -0.413e-10■□□□□ 10
TARDBP-230ENST00000639083 SUB1P53999 127 aaKnown RBP eCLIP8.64□□□□□ -1.031e-11■□□□□ 9.4
TARDBP-230ENST00000639083 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.99□□□□□ -0.491e-6■□□□□ 9.2
TARDBP-230ENST00000639083 ZNF622Q969S3 477 aaKnown RBP eCLIP12.54□□□□□ -0.43e-23■□□□□ 9.1
TARDBP-230ENST00000639083 PPIGQ13427 754 aaKnown RBP eCLIP10.86□□□□□ -0.676e-7■□□□□ 8.8
TARDBP-230ENST00000639083 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.86□□□□□ -0.352e-12■□□□□ 8.7
TARDBP-230ENST00000639083 ILF3Q12906 894 aaKnown RBP eCLIP10.26□□□□□ -0.776e-6■□□□□ 8.6
TARDBP-230ENST00000639083 YBX3P16989 372 aaKnown RBP eCLIP11.96□□□□□ -0.498e-13■□□□□ 8.1
Retrieved 46 of 46 RNA–protein pairs in 20.7 ms