RNA–Protein interactions for RNA: ENST00000638264.1

TARDBP-229, Transcript of TAR DNA binding protein, human

TSL 1 (best) BASIC

Gene TARDBP, Length 774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TARDBP-229	ENST00000638264	DDX3X	O00571	662 aa	Known RBP eCLIP	12.35	□□□□□ -0.43	3e-30	■■■■■ 33.2
TARDBP-229	ENST00000638264	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.53	□□□□□ -0.4	1e-28	■■■■■ 32.6
TARDBP-229	ENST00000638264	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.12	□□□□□ -0.47	7e-26	■■■□□ 18.2
TARDBP-229	ENST00000638264	ZNF622	Q969S3	477 aa	Known RBP eCLIP	14.32	□□□□□ -0.12	3e-23	■□□□□ 9.1
TARDBP-229	ENST00000638264	PRPF4	O43172	522 aa	Known RBP eCLIP	11.46	□□□□□ -0.57	2e-14	■■□□□ 12.4
TARDBP-229	ENST00000638264	ZRANB2	O95218	330 aa	Known RBP eCLIP	12.11	□□□□□ -0.47	5e-13	■□□□□ 10.2
TARDBP-229	ENST00000638264	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	14.13	□□□□□ -0.15	2e-12	■□□□□ 8.7
TARDBP-229	ENST00000638264	NCBP2	P52298	156 aa	Known RBP eCLIP	10.94	□□□□□ -0.66	9e-12	■□□□□ 8.6
TARDBP-229	ENST00000638264	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.52	□□□□□ -0.41	1e-11	■■□□□ 11.7
TARDBP-229	ENST00000638264	UPF1	Q92900	1129 aa	Known RBP eCLIP	14.93	□□□□□ -0.02	2e-11	■■■□□ 15.1
TARDBP-229	ENST00000638264	CDC40	O60508	579 aa	Known RBP eCLIP	10.62	□□□□□ -0.71	5e-11	■□□□□ 8.5
TARDBP-229	ENST00000638264	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.6	□□□□□ -0.39	2e-10	■□□□□ 9.1
TARDBP-229	ENST00000638264	U2AF2	P26368	475 aa	Known RBP eCLIP	13.38	□□□□□ -0.27	3e-10	■□□□□ 10
TARDBP-229	ENST00000638264	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.21	□□□□□ -0.45	1e-9	■□□□□ 10.4
TARDBP-229	ENST00000638264	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	17.13	■□□□□ 0.33	2e-9	■■□□□ 13.4
TARDBP-229	ENST00000638264	G3BP1	Q13283	466 aa	Known RBP eCLIP	14.44	□□□□□ -0.1	5e-9	■□□□□ 10.1
TARDBP-229	ENST00000638264	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	9.49	□□□□□ -0.89	5e-9	■■■■■ 42.5
TARDBP-229	ENST00000638264	DDX6	P26196	483 aa	Known RBP eCLIP	12.18	□□□□□ -0.46	1e-8	■□□□□ 10.3
TARDBP-229	ENST00000638264	TIA1	P31483	386 aa	Known RBP eCLIP	11.09	□□□□□ -0.63	1e-8	■■□□□ 14.3
TARDBP-229	ENST00000638264	SMNDC1	O75940	238 aa	Known RBP eCLIP	10.25	□□□□□ -0.77	2e-8	■■■■■ 29.2
TARDBP-229	ENST00000638264	SRSF1	Q07955	248 aa	Known RBP eCLIP	10.03	□□□□□ -0.8	4e-8	■□□□□ 11.3
TARDBP-229	ENST00000638264	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.14	□□□□□ -0.63	5e-8	■■■■■ 204.6
TARDBP-229	ENST00000638264	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.43	□□□□□ -0.42	1e-7	■■■■□ 22.4
TARDBP-229	ENST00000638264	FXR2	P51116	673 aa	Known RBP eCLIP	13.18	□□□□□ -0.3	2e-7	■■□□□ 11.5
TARDBP-229	ENST00000638264	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.87	□□□□□ -0.51	2e-7	■■■■■ 31.6
TARDBP-229	ENST00000638264	AQR	O60306	1485 aa	Known RBP eCLIP	19.16	■□□□□ 0.66	2e-7	■■□□□ 14.3
TARDBP-229	ENST00000638264	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.5	□□□□□ -0.73	2e-7	■□□□□ 10.4
TARDBP-229	ENST00000638264	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	15.38	■□□□□ 0.05	3e-7	■■□□□ 13.6
TARDBP-229	ENST00000638264	U2AF1	Q01081	240 aa	Known RBP eCLIP	15.5	■□□□□ 0.07	3e-7	■■■□□ 15.3
TARDBP-229	ENST00000638264	PPIG	Q13427	754 aa	Known RBP eCLIP	12.64	□□□□□ -0.39	6e-7	■□□□□ 8.8
TARDBP-229	ENST00000638264	HNRNPM	P52272	730 aa	Known RBP eCLIP	17.57	■□□□□ 0.4	1e-6	■■□□□ 12.6
TARDBP-229	ENST00000638264	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.59	□□□□□ -0.71	3e-6	■■■■□ 22.6
TARDBP-229	ENST00000638264	ILF3	Q12906	894 aa	Known RBP eCLIP	11.43	□□□□□ -0.58	6e-6	■□□□□ 8.6
TARDBP-229	ENST00000638264	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	7e-6	■■■■■ 27.5

Retrieved 34 of 34 RNA–protein pairs in 7.3 ms