RNA–Protein interactions for RNA: ENST00000630016.1

CHD2-219, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 3

Gene CHD2, Length 607 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-219ENST00000630016 AEBP2Q6ZN18 517 aaPredicted RBP24.9■■□□□ 1.58
CHD2-219ENST00000630016 CHIC1Q5VXU3 224 aa23.74■■□□□ 1.39
CHD2-219ENST00000630016 SENP3Q9H4L4 574 aaPredicted RBP21.34■■□□□ 1.01
CHD2-219ENST00000630016 PHF23Q9BUL5 403 aaPredicted RBP21.01■□□□□ 0.95
CHD2-219ENST00000630016 FOXD1Q16676 465 aa19.81■□□□□ 0.76
CHD2-219ENST00000630016 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
CHD2-219ENST00000630016 MSH5O43196 834 aa18.61■□□□□ 0.57
CHD2-219ENST00000630016 PIAS4Q8N2W9 510 aaPredicted RBP18.58■□□□□ 0.56
CHD2-219ENST00000630016 PPP6R1Q9UPN7 881 aa18.51■□□□□ 0.55
CHD2-219ENST00000630016 ADRA2BP18089 450 aa18.48■□□□□ 0.55
CHD2-219ENST00000630016 POTEDQ86YR6 584 aa18.32■□□□□ 0.52
CHD2-219ENST00000630016 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
CHD2-219ENST00000630016 MAPK8IP2Q13387 824 aaPredicted RBP16.94■□□□□ 0.3
CHD2-219ENST00000630016 DMRT2Q9Y5R5 561 aa16.89■□□□□ 0.29
CHD2-219ENST00000630016 PPP4R3CPQ6ZMV5 832 aa16.66■□□□□ 0.26
CHD2-219ENST00000630016 CNKSR2Q8WXI2 1034 aa16.36■□□□□ 0.21
CHD2-219ENST00000630016 HOXD11P31277 338 aaPredicted RBP16.28■□□□□ 0.2
CHD2-219ENST00000630016 DCAF8L1A6NGE4 600 aa16.24■□□□□ 0.19
CHD2-219ENST00000630016 RNF216Q9NWF9 866 aaPredicted RBP16.2■□□□□ 0.18
CHD2-219ENST00000630016 NCBP3Q53F19 620 aaKnown RBP16.08■□□□□ 0.16
CHD2-219ENST00000630016 CACNB1Q02641 598 aaPredicted RBP15.93■□□□□ 0.14
CHD2-219ENST00000630016 RNF39Q9H2S5 420 aa15.83■□□□□ 0.12
CHD2-219ENST00000630016 NPM3O75607 178 aaKnown RBP15.78■□□□□ 0.12
CHD2-219ENST00000630016 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
CHD2-219ENST00000630016 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
CHD2-219ENST00000630016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.55■□□□□ 0.08
CHD2-219ENST00000630016 KCNA4P22459 653 aa15.5■□□□□ 0.07
CHD2-219ENST00000630016 U3KPZ7 1027 aaPredicted RBP15.19■□□□□ 0.02
CHD2-219ENST00000630016 SLC4A2P04920 1241 aa15.03■□□□□ -0
CHD2-219ENST00000630016 CAPN15O75808 1086 aa14.97□□□□□ -0.01
CHD2-219ENST00000630016 SPINK5Q9NQ38 1064 aaPredicted RBP14.94□□□□□ -0.02
CHD2-219ENST00000630016 APLP2Q06481 763 aa14.89□□□□□ -0.03
CHD2-219ENST00000630016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.86□□□□□ -0.03
CHD2-219ENST00000630016 HNRNPUL2Q1KMD3 747 aaKnown RBP14.86□□□□□ -0.03
CHD2-219ENST00000630016 DSG3P32926 999 aa14.83□□□□□ -0.04
CHD2-219ENST00000630016 SAMD1Q6SPF0 538 aaPredicted RBP14.75□□□□□ -0.05
CHD2-219ENST00000630016 ZNF219Q9P2Y4 722 aaPredicted RBP14.75□□□□□ -0.05
CHD2-219ENST00000630016 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
CHD2-219ENST00000630016 SLC4A1APQ9BWU0 796 aaKnown RBP14.69□□□□□ -0.06
CHD2-219ENST00000630016 MYCNP04198 464 aaPredicted RBP14.65□□□□□ -0.06
CHD2-219ENST00000630016 ABCB7O75027 752 aa14.61□□□□□ -0.07
CHD2-219ENST00000630016 FOXD4L1Q9NU39 408 aa14.51□□□□□ -0.09
CHD2-219ENST00000630016 POLA2Q14181 598 aa14.32□□□□□ -0.12
CHD2-219ENST00000630016 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
CHD2-219ENST00000630016 ZBTB22O15209 634 aa14.22□□□□□ -0.13
CHD2-219ENST00000630016 ATF5Q9Y2D1 282 aaPredicted RBP14.21□□□□□ -0.13
CHD2-219ENST00000630016 POTEHQ6S545 545 aa14.19□□□□□ -0.14
CHD2-219ENST00000630016 ZBTB12Q9Y330 459 aaPredicted RBP14.12□□□□□ -0.15
CHD2-219ENST00000630016 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
CHD2-219ENST00000630016 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
CHD2-219ENST00000630016 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
CHD2-219ENST00000630016 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
CHD2-219ENST00000630016 FBLN2P98095 1184 aa13.78□□□□□ -0.2
CHD2-219ENST00000630016 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
CHD2-219ENST00000630016 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
CHD2-219ENST00000630016 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
CHD2-219ENST00000630016 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
CHD2-219ENST00000630016 CSRNP3Q8WYN3 585 aa13.61□□□□□ -0.23
CHD2-219ENST00000630016 PITPNM1O00562 1244 aa13.58□□□□□ -0.24
CHD2-219ENST00000630016 MKRN4PQ13434 485 aaPredicted RBP13.57□□□□□ -0.24
CHD2-219ENST00000630016 PIP4P2Q8N4L2 257 aa13.51□□□□□ -0.25
CHD2-219ENST00000630016 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
CHD2-219ENST00000630016 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
CHD2-219ENST00000630016 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.26
CHD2-219ENST00000630016 SSUH2Q9Y2M2 353 aa13.44□□□□□ -0.26
CHD2-219ENST00000630016 SPDYE1Q8NFV5 336 aaPredicted RBP13.41□□□□□ -0.26
CHD2-219ENST00000630016 CLEC11AQ9Y240 323 aa13.38□□□□□ -0.27
CHD2-219ENST00000630016 SP7Q8TDD2 431 aaPredicted RBP13.3□□□□□ -0.28
CHD2-219ENST00000630016 HAX1O00165 279 aa13.29□□□□□ -0.28
CHD2-219ENST00000630016 PABPN1Q86U42 306 aaKnown RBP eCLIP13.28□□□□□ -0.28
CHD2-219ENST00000630016 PRKAR2AP13861 404 aaKnown RBP13.24□□□□□ -0.29
CHD2-219ENST00000630016 PRR29P0C7W0 189 aa13.16□□□□□ -0.3
CHD2-219ENST00000630016 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
CHD2-219ENST00000630016 EVX2Q03828 476 aa13.03□□□□□ -0.32
CHD2-219ENST00000630016 SPDYE4A6NLX3 237 aa13.02□□□□□ -0.33
CHD2-219ENST00000630016 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
CHD2-219ENST00000630016 STAG3Q9UJ98 1225 aa12.96□□□□□ -0.33
CHD2-219ENST00000630016 FARP1Q9Y4F1 1045 aaPredicted RBP12.9□□□□□ -0.34
CHD2-219ENST00000630016 CD44P16070 742 aaKnown RBP12.84□□□□□ -0.35
CHD2-219ENST00000630016 GABBR2O75899 941 aa12.8□□□□□ -0.36
CHD2-219ENST00000630016 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
CHD2-219ENST00000630016 CLCN6P51797 869 aa12.69□□□□□ -0.38
CHD2-219ENST00000630016 PROM2Q8N271 834 aa12.66□□□□□ -0.38
CHD2-219ENST00000630016 ZRANB1Q9UGI0 708 aa12.66□□□□□ -0.38
CHD2-219ENST00000630016 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
CHD2-219ENST00000630016 PAK3O75914 559 aaPredicted RBP12.63□□□□□ -0.39
CHD2-219ENST00000630016 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
CHD2-219ENST00000630016 MNX1P50219 401 aaPredicted RBP12.55□□□□□ -0.4
CHD2-219ENST00000630016 DCBLD2Q96PD2 775 aa12.53□□□□□ -0.4
CHD2-219ENST00000630016 PLEKHG5O94827 1062 aa12.49□□□□□ -0.41
CHD2-219ENST00000630016 POTEIP0CG38 1075 aa12.49□□□□□ -0.41
CHD2-219ENST00000630016 LHX8Q68G74 356 aa12.47□□□□□ -0.41
CHD2-219ENST00000630016 PHF12Q96QT6 1004 aa12.46□□□□□ -0.41
CHD2-219ENST00000630016 GALR2O43603 387 aaPredicted RBP12.45□□□□□ -0.42
CHD2-219ENST00000630016 FKBP8Q14318 412 aa12.41□□□□□ -0.42
CHD2-219ENST00000630016 MIER1Q8N108 512 aa12.41□□□□□ -0.42
CHD2-219ENST00000630016 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
CHD2-219ENST00000630016 PLCD3Q8N3E9 789 aa12.35□□□□□ -0.43
CHD2-219ENST00000630016 MS4A3Q96HJ5 214 aa12.31□□□□□ -0.44
CHD2-219ENST00000630016 ZBTB47Q9UFB7 747 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms