RNA–Protein interactions for RNA: ENST00000629725.2

TARDBP-228, Transcript of TAR DNA binding protein, humanhuman

TSL 5 BASIC

Gene TARDBP, Length 1,031 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-228ENST00000629725 DDX3XO00571 662 aaKnown RBP eCLIP19.71■□□□□ 0.751e-28■■■■■ 35.7
TARDBP-228ENST00000629725 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.55■■□□□ 1.361e-28■■■■■ 32.6
TARDBP-228ENST00000629725 GTF2F1P35269 517 aaKnown RBP eCLIP23.29■■□□□ 1.327e-26■■■□□ 18.2
TARDBP-228ENST00000629725 ZNF622Q969S3 477 aaKnown RBP eCLIP27.33■■□□□ 1.973e-23■□□□□ 9.1
TARDBP-228ENST00000629725 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.8■□□□□ 0.442e-21■■□□□ 12.4
TARDBP-228ENST00000629725 PRPF4O43172 522 aaKnown RBP eCLIP19.13■□□□□ 0.652e-14■■□□□ 12.4
TARDBP-228ENST00000629725 ZRANB2O95218 330 aaKnown RBP eCLIP19.25■□□□□ 0.675e-13■□□□□ 10.2
TARDBP-228ENST00000629725 YBX3P16989 372 aaKnown RBP eCLIP28.45■■■□□ 2.148e-13■□□□□ 8.1
TARDBP-228ENST00000629725 NCBP2P52298 156 aaKnown RBP eCLIP17.91■□□□□ 0.461e-12■■■□□ 17.9
TARDBP-228ENST00000629725 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.2■■□□□ 1.462e-12■□□□□ 8.7
TARDBP-228ENST00000629725 SUB1P53999 127 aaKnown RBP eCLIP14.33□□□□□ -0.121e-11■□□□□ 9.4
TARDBP-228ENST00000629725 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.26■■□□□ 1.471e-11■■□□□ 11.7
TARDBP-228ENST00000629725 UPF1Q92900 1129 aaKnown RBP eCLIP31.12■■■□□ 2.572e-11■■■□□ 15.1
TARDBP-228ENST00000629725 U2AF2P26368 475 aaKnown RBP eCLIP21.76■■□□□ 1.073e-10■□□□□ 10
TARDBP-228ENST00000629725 KHSRPQ92945 711 aaKnown RBP eCLIP23.72■■□□□ 1.391e-9■□□□□ 10.4
TARDBP-228ENST00000629725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.79■■■□□ 2.682e-9■■□□□ 13.4
TARDBP-228ENST00000629725 G3BP1Q13283 466 aaKnown RBP eCLIP24.72■■□□□ 1.555e-9■□□□□ 10.1
TARDBP-228ENST00000629725 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.94■□□□□ 0.465e-9■■■■■ 33.2
TARDBP-228ENST00000629725 TIA1P31483 386 aaKnown RBP eCLIP17.88■□□□□ 0.451e-8■■□□□ 14.3
TARDBP-228ENST00000629725 SMNDC1O75940 238 aaKnown RBP eCLIP18.27■□□□□ 0.522e-8■■■■■ 29.2
TARDBP-228ENST00000629725 RPS3P23396 243 aaKnown RBP eCLIP18.97■□□□□ 0.633e-8■□□□□ 11
TARDBP-228ENST00000629725 SRSF1Q07955 248 aaKnown RBP eCLIP20.5■□□□□ 0.874e-8■□□□□ 11.3
TARDBP-228ENST00000629725 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.57■□□□□ 0.565e-8■■■■■ 204.6
TARDBP-228ENST00000629725 DDX6P26196 483 aaKnown RBP eCLIP21.79■■□□□ 1.081e-7■■■■□ 21
TARDBP-228ENST00000629725 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.29■■□□□ 11e-7■■■■□ 22.4
TARDBP-228ENST00000629725 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.94■■■■□ 3.021e-7■■■■■ 34.9
TARDBP-228ENST00000629725 FXR2P51116 673 aaKnown RBP eCLIP21.94■■□□□ 1.12e-7■■□□□ 11.5
TARDBP-228ENST00000629725 AQRO60306 1485 aaKnown RBP eCLIP37.61■■■■□ 3.612e-7■■□□□ 14.3
TARDBP-228ENST00000629725 RBM22Q9NW64 420 aaKnown RBP eCLIP19.78■□□□□ 0.762e-7■■■■■ 31.6
TARDBP-228ENST00000629725 SF3B4Q15427 424 aaKnown RBP eCLIP18.49■□□□□ 0.552e-7■□□□□ 10.4
TARDBP-228ENST00000629725 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.02■■■□□ 2.083e-7■■□□□ 13.6
TARDBP-228ENST00000629725 U2AF1Q01081 240 aaKnown RBP eCLIP26.85■■□□□ 1.893e-7■■■□□ 15.3
TARDBP-228ENST00000629725 WRNQ14191 1432 aaPredicted RBP eCLIP36.51■■■■□ 3.436e-7■□□□□ 11.3
TARDBP-228ENST00000629725 PPIGQ13427 754 aaKnown RBP eCLIP24.22■■□□□ 1.476e-7■□□□□ 8.8
TARDBP-228ENST00000629725 HNRNPMP52272 730 aaKnown RBP eCLIP32.91■■■□□ 2.867e-7■■□□□ 12.4
TARDBP-228ENST00000629725 RBM15Q96T37 977 aaKnown RBP eCLIP20.33■□□□□ 0.859e-7■■■□□ 18.3
TARDBP-228ENST00000629725 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.25■□□□□ 0.671e-6■□□□□ 9.2
TARDBP-228ENST00000629725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.37■■■□□ 2.771e-6■■■□□ 15.4
TARDBP-228ENST00000629725 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.26■□□□□ 0.673e-6■■■■□ 22.6
TARDBP-228ENST00000629725 CDC40O60508 579 aaKnown RBP eCLIP18.89■□□□□ 0.615e-6■■□□□ 12.3
TARDBP-228ENST00000629725 ILF3Q12906 894 aaKnown RBP eCLIP20.17■□□□□ 0.826e-6■□□□□ 8.6
TARDBP-228ENST00000629725 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.45■□□□□ 0.77e-6■■■■■ 27.5
Retrieved 42 of 42 RNA–protein pairs in 5.2 ms