RNA–Protein interactions for RNA: ENST00000629036.2

DDX41-219, Transcript of DEAD-box helicase 41, humanhuman

TSL 4 BASIC

Gene DDX41, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-219ENST00000629036 NISCHQ9Y2I1 1504 aa27.51■■■□□ 2
DDX41-219ENST00000629036 CCDC180Q9P1Z9 1646 aa24.58■■□□□ 1.53
DDX41-219ENST00000629036 ABCC9O60706 1549 aa24.23■■□□□ 1.47
DDX41-219ENST00000629036 DNAJC5BQ9UF47 199 aa23.22■■□□□ 1.31
DDX41-219ENST00000629036 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
DDX41-219ENST00000629036 NACADO15069 1562 aa23■■□□□ 1.27
DDX41-219ENST00000629036 ZCCHC6Q5VYS8 1495 aaKnown RBP22.97■■□□□ 1.27
DDX41-219ENST00000629036 MYO15BQ96JP2 1530 aa22.92■■□□□ 1.26
DDX41-219ENST00000629036 DCAF1Q9Y4B6 1507 aa22.82■■□□□ 1.24
DDX41-219ENST00000629036 UNC13AQ9UPW8 1703 aa22.73■■□□□ 1.23
DDX41-219ENST00000629036 DCAF8L2P0C7V8 631 aa22.62■■□□□ 1.21
DDX41-219ENST00000629036 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
DDX41-219ENST00000629036 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.18
DDX41-219ENST00000629036 SCRIBQ14160 1630 aa22.33■■□□□ 1.17
DDX41-219ENST00000629036 SHROOM4Q9ULL8 1493 aa22.13■■□□□ 1.13
DDX41-219ENST00000629036 CC2D2AQ9P2K1 1620 aa21.86■■□□□ 1.09
DDX41-219ENST00000629036 CECR2Q9BXF3 1484 aa21.84■■□□□ 1.09
DDX41-219ENST00000629036 EIF4G1Q04637 1599 aaKnown RBP21.78■■□□□ 1.08
DDX41-219ENST00000629036 DNAJC5Q9H3Z4 198 aa21.72■■□□□ 1.07
DDX41-219ENST00000629036 SMARCA4P51532 1647 aa21.4■■□□□ 1.02
DDX41-219ENST00000629036 BAZ1AQ9NRL2 1556 aaPredicted RBP21.3■■□□□ 1
DDX41-219ENST00000629036 PEG3Q9GZU2 1588 aa21.24■□□□□ 0.99
DDX41-219ENST00000629036 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
DDX41-219ENST00000629036 ATAD2BQ9ULI0 1458 aa21.22■□□□□ 0.99
DDX41-219ENST00000629036 NCAPD3P42695 1498 aa21.2■□□□□ 0.98
DDX41-219ENST00000629036 SMARCA2P51531 1590 aa21.19■□□□□ 0.98
DDX41-219ENST00000629036 HMGXB3Q12766 1538 aa21.16■□□□□ 0.98
DDX41-219ENST00000629036 CUX2O14529 1486 aa21.03■□□□□ 0.96
DDX41-219ENST00000629036 WIZO95785 1651 aa21.02■□□□□ 0.96
DDX41-219ENST00000629036 BAZ1BQ9UIG0 1483 aaKnown RBP20.99■□□□□ 0.95
DDX41-219ENST00000629036 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
DDX41-219ENST00000629036 RSF1Q96T23 1441 aaPredicted RBP20.92■□□□□ 0.94
DDX41-219ENST00000629036 TOP2AP11388 1531 aaKnown RBP20.78■□□□□ 0.92
DDX41-219ENST00000629036 NESP48681 1621 aa20.72■□□□□ 0.91
DDX41-219ENST00000629036 LAMC3Q9Y6N6 1575 aa20.68■□□□□ 0.9
DDX41-219ENST00000629036 TRIM41Q8WV44 630 aa20.65■□□□□ 0.9
DDX41-219ENST00000629036 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.89
DDX41-219ENST00000629036 THOC2Q8NI27 1593 aaKnown RBP20.55■□□□□ 0.88
DDX41-219ENST00000629036 CADPSQ9ULU8 1353 aa20.51■□□□□ 0.87
DDX41-219ENST00000629036 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
DDX41-219ENST00000629036 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
DDX41-219ENST00000629036 CFTRP13569 1480 aa20.47■□□□□ 0.87
DDX41-219ENST00000629036 PDS5BQ9NTI5 1447 aa20.4■□□□□ 0.86
DDX41-219ENST00000629036 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
DDX41-219ENST00000629036 WDR62O43379 1518 aa20.3■□□□□ 0.84
DDX41-219ENST00000629036 CEP164Q9UPV0 1460 aa20.29■□□□□ 0.84
DDX41-219ENST00000629036 MRC2Q9UBG0 1479 aa20.28■□□□□ 0.84
DDX41-219ENST00000629036 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
DDX41-219ENST00000629036 SUPT5HO00267 1087 aaKnown RBP20.14■□□□□ 0.81
DDX41-219ENST00000629036 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
DDX41-219ENST00000629036 TOPBP1Q92547 1522 aa20.03■□□□□ 0.8
DDX41-219ENST00000629036 OSCARQ8IYS5 282 aa19.98■□□□□ 0.79
DDX41-219ENST00000629036 ABCC8Q09428 1581 aa19.95■□□□□ 0.78
DDX41-219ENST00000629036 CUX1P39880 1505 aa19.92■□□□□ 0.78
DDX41-219ENST00000629036 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
DDX41-219ENST00000629036 RIMBP3CA6NJZ7 1639 aa19.91■□□□□ 0.78
DDX41-219ENST00000629036 RIMBP3BA6NNM3 1639 aa19.91■□□□□ 0.78
DDX41-219ENST00000629036 RIMBP3Q9UFD9 1639 aa19.91■□□□□ 0.78
DDX41-219ENST00000629036 POLA1P09884 1462 aaPredicted RBP19.86■□□□□ 0.77
DDX41-219ENST00000629036 IFT140Q96RY7 1462 aa19.86■□□□□ 0.77
DDX41-219ENST00000629036 ZNF608Q9ULD9 1512 aaPredicted RBP19.83■□□□□ 0.77
DDX41-219ENST00000629036 WDR97A6NE52 1622 aa19.83■□□□□ 0.76
DDX41-219ENST00000629036 EIF4G3O43432 1585 aaKnown RBP19.82■□□□□ 0.76
DDX41-219ENST00000629036 BIVM-ERCC5R4GMW8 1640 aa19.8■□□□□ 0.76
DDX41-219ENST00000629036 FGD5Q6ZNL6 1462 aa19.79■□□□□ 0.76
DDX41-219ENST00000629036 SYNJ1O43426 1573 aa19.77■□□□□ 0.76
DDX41-219ENST00000629036 TOP2BQ02880 1626 aa19.75■□□□□ 0.75
DDX41-219ENST00000629036 RAD54L2Q9Y4B4 1467 aa19.74■□□□□ 0.75
DDX41-219ENST00000629036 ARHGEF11O15085 1522 aa19.71■□□□□ 0.75
DDX41-219ENST00000629036 SOGA1O94964 1423 aa19.68■□□□□ 0.74
DDX41-219ENST00000629036 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
DDX41-219ENST00000629036 ABCA5Q8WWZ7 1642 aa19.65■□□□□ 0.74
DDX41-219ENST00000629036 TRHP20396 242 aaPredicted RBP19.64■□□□□ 0.73
DDX41-219ENST00000629036 AQRO60306 1485 aaKnown RBP eCLIP19.64■□□□□ 0.736e-11■■■■■ 93.1
DDX41-219ENST00000629036 ABCA10Q8WWZ4 1543 aa19.63■□□□□ 0.73
DDX41-219ENST00000629036 CYB5RLQ6IPT4 315 aa19.62■□□□□ 0.73
DDX41-219ENST00000629036 PBRM1Q86U86 1689 aa19.62■□□□□ 0.73
DDX41-219ENST00000629036 CHD1O14646 1710 aa19.6■□□□□ 0.73
DDX41-219ENST00000629036 TDRD9Q8NDG6 1382 aaKnown RBP19.56■□□□□ 0.72
DDX41-219ENST00000629036 AEBP2Q6ZN18 517 aaPredicted RBP19.52■□□□□ 0.72
DDX41-219ENST00000629036 SNAPC4Q5SXM2 1469 aa19.5■□□□□ 0.71
DDX41-219ENST00000629036 GAPVD1Q14C86 1478 aa19.49■□□□□ 0.71
DDX41-219ENST00000629036 GRIN2BQ13224 1484 aa19.48■□□□□ 0.71
DDX41-219ENST00000629036 ARAP1Q96P48 1450 aa19.48■□□□□ 0.71
DDX41-219ENST00000629036 MAGI1Q96QZ7 1491 aaPredicted RBP19.48■□□□□ 0.71
DDX41-219ENST00000629036 ADAMTS12P58397 1594 aa19.43■□□□□ 0.7
DDX41-219ENST00000629036 SYNJ2O15056 1496 aa19.39■□□□□ 0.69
DDX41-219ENST00000629036 ERICH3Q5RHP9 1530 aa19.39■□□□□ 0.69
DDX41-219ENST00000629036 FBLN2P98095 1184 aa19.38■□□□□ 0.69
DDX41-219ENST00000629036 CLASP1Q7Z460 1538 aa19.37■□□□□ 0.69
DDX41-219ENST00000629036 GRIN2AQ12879 1464 aa19.28■□□□□ 0.68
DDX41-219ENST00000629036 CEP170Q5SW79 1584 aa19.27■□□□□ 0.67
DDX41-219ENST00000629036 FHAD1B1AJZ9 1412 aa19.25■□□□□ 0.67
DDX41-219ENST00000629036 CUL7Q14999 1698 aa19.24■□□□□ 0.67
DDX41-219ENST00000629036 NUP160Q12769 1436 aa19.23■□□□□ 0.67
DDX41-219ENST00000629036 KIF27Q86VH2 1401 aa19.22■□□□□ 0.67
DDX41-219ENST00000629036 IGF1RP08069 1367 aa19.19■□□□□ 0.66
DDX41-219ENST00000629036 SHROOM2Q13796 1616 aa19.18■□□□□ 0.66
DDX41-219ENST00000629036 CHMP7Q8WUX9 453 aaPredicted RBP19.18■□□□□ 0.66
DDX41-219ENST00000629036 RUSC2Q8N2Y8 1516 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms