RNA–Protein interactions for RNA: ENST00000623342.1

SND1-IT1-201, SND1 intronic transcript 1, humanhuman

BASIC

Gene SND1-IT1, Length 2,481 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1-201ENST00000623342 NISCHQ9Y2I1 1504 aa17.71■□□□□ 0.43
SND1-IT1-201ENST00000623342 CCDC180Q9P1Z9 1646 aa15.19■□□□□ 0.02
SND1-IT1-201ENST00000623342 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.01
SND1-IT1-201ENST00000623342 SHROOM4Q9ULL8 1493 aa14.85□□□□□ -0.03
SND1-IT1-201ENST00000623342 DCAF8L2P0C7V8 631 aa14.64□□□□□ -0.07
SND1-IT1-201ENST00000623342 DCAF1Q9Y4B6 1507 aa14.6□□□□□ -0.07
SND1-IT1-201ENST00000623342 SUPT5HO00267 1087 aaKnown RBP14.51□□□□□ -0.09
SND1-IT1-201ENST00000623342 ABCC9O60706 1549 aa14.33□□□□□ -0.11
SND1-IT1-201ENST00000623342 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
SND1-IT1-201ENST00000623342 SCRIBQ14160 1630 aa14.11□□□□□ -0.15
SND1-IT1-201ENST00000623342 CHIC1Q5VXU3 224 aa14.09□□□□□ -0.15
SND1-IT1-201ENST00000623342 NACADO15069 1562 aa14.06□□□□□ -0.16
SND1-IT1-201ENST00000623342 RSF1Q96T23 1441 aaPredicted RBP13.92□□□□□ -0.18
SND1-IT1-201ENST00000623342 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
SND1-IT1-201ENST00000623342 CECR2Q9BXF3 1484 aa13.76□□□□□ -0.21
SND1-IT1-201ENST00000623342 UNC13AQ9UPW8 1703 aa13.76□□□□□ -0.21
SND1-IT1-201ENST00000623342 MROH2BQ7Z745 1585 aa13.72□□□□□ -0.21
SND1-IT1-201ENST00000623342 AEBP2Q6ZN18 517 aaPredicted RBP13.71□□□□□ -0.21
SND1-IT1-201ENST00000623342 PABPN1Q86U42 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
SND1-IT1-201ENST00000623342 WIZO95785 1651 aa13.64□□□□□ -0.23
SND1-IT1-201ENST00000623342 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
SND1-IT1-201ENST00000623342 LOC105371045A0A1W2PR82 267 aa13.61□□□□□ -0.23
SND1-IT1-201ENST00000623342 TRIM41Q8WV44 630 aa13.58□□□□□ -0.24
SND1-IT1-201ENST00000623342 BICRAQ9NZM4 1560 aa13.55□□□□□ -0.24
SND1-IT1-201ENST00000623342 SMARCA4P51532 1647 aa13.52□□□□□ -0.25
SND1-IT1-201ENST00000623342 TOP2AP11388 1531 aaKnown RBP13.48□□□□□ -0.25
SND1-IT1-201ENST00000623342 PCGF6Q9BYE7 350 aa13.46□□□□□ -0.26
SND1-IT1-201ENST00000623342 EIF4G1Q04637 1599 aaKnown RBP13.44□□□□□ -0.26
SND1-IT1-201ENST00000623342 HRCP23327 699 aa13.4□□□□□ -0.26
SND1-IT1-201ENST00000623342 FAM9AQ8IZU1 332 aaPredicted RBP13.38□□□□□ -0.27
SND1-IT1-201ENST00000623342 SMARCA2P51531 1590 aa13.38□□□□□ -0.27
SND1-IT1-201ENST00000623342 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
SND1-IT1-201ENST00000623342 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
SND1-IT1-201ENST00000623342 TRIM26Q12899 539 aaPredicted RBP13.31□□□□□ -0.28
SND1-IT1-201ENST00000623342 ABCC8Q09428 1581 aa13.26□□□□□ -0.29
SND1-IT1-201ENST00000623342 EHMT2Q96KQ7 1210 aa13.21□□□□□ -0.29
SND1-IT1-201ENST00000623342 ATAD2BQ9ULI0 1458 aa13.19□□□□□ -0.3
SND1-IT1-201ENST00000623342 BAZ1BQ9UIG0 1483 aaKnown RBP13.15□□□□□ -0.3
SND1-IT1-201ENST00000623342 EEA1Q15075 1411 aa13.11□□□□□ -0.31
SND1-IT1-201ENST00000623342 SOGA1O94964 1423 aa13.1□□□□□ -0.31
SND1-IT1-201ENST00000623342 WRNQ14191 1432 aaPredicted RBP eCLIP13.09□□□□□ -0.31
SND1-IT1-201ENST00000623342 PPARGC1BQ86YN6 1023 aaKnown RBP13.06□□□□□ -0.32
SND1-IT1-201ENST00000623342 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
SND1-IT1-201ENST00000623342 RUSC2Q8N2Y8 1516 aa13.03□□□□□ -0.32
SND1-IT1-201ENST00000623342 SYNJ1O43426 1573 aa13.03□□□□□ -0.32
SND1-IT1-201ENST00000623342 TNIKQ9UKE5 1360 aa13.02□□□□□ -0.32
SND1-IT1-201ENST00000623342 CEP162Q5TB80 1403 aa13□□□□□ -0.33
SND1-IT1-201ENST00000623342 HMGXB3Q12766 1538 aa12.99□□□□□ -0.33
SND1-IT1-201ENST00000623342 ZEB1P37275 1124 aaPredicted RBP12.99□□□□□ -0.33
SND1-IT1-201ENST00000623342 NCAPD3P42695 1498 aa12.99□□□□□ -0.33
SND1-IT1-201ENST00000623342 GOLGA3Q08378 1498 aa12.98□□□□□ -0.33
SND1-IT1-201ENST00000623342 UBTFP17480 764 aaKnown RBP12.95□□□□□ -0.34
SND1-IT1-201ENST00000623342 KIF21BO75037 1637 aa12.93□□□□□ -0.34
SND1-IT1-201ENST00000623342 CEP164Q9UPV0 1460 aa12.92□□□□□ -0.34
SND1-IT1-201ENST00000623342 TOP2BQ02880 1626 aa12.92□□□□□ -0.34
SND1-IT1-201ENST00000623342 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
SND1-IT1-201ENST00000623342 CC2D2AQ9P2K1 1620 aa12.89□□□□□ -0.35
SND1-IT1-201ENST00000623342 DNAJC5BQ9UF47 199 aa12.86□□□□□ -0.35
SND1-IT1-201ENST00000623342 CFTRP13569 1480 aa12.83□□□□□ -0.35
SND1-IT1-201ENST00000623342 RAPGEF2Q9Y4G8 1499 aa12.81□□□□□ -0.36
SND1-IT1-201ENST00000623342 CLIP1P30622 1438 aa12.8□□□□□ -0.36
SND1-IT1-201ENST00000623342 CUX1P39880 1505 aa12.79□□□□□ -0.36
SND1-IT1-201ENST00000623342 TTBK1Q5TCY1 1321 aaPredicted RBP12.76□□□□□ -0.37
SND1-IT1-201ENST00000623342 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
SND1-IT1-201ENST00000623342 ERICH3Q5RHP9 1530 aa12.75□□□□□ -0.37
SND1-IT1-201ENST00000623342 PRXQ9BXM0 1461 aa12.74□□□□□ -0.37
SND1-IT1-201ENST00000623342 VPS8Q8N3P4 1428 aa12.74□□□□□ -0.37
SND1-IT1-201ENST00000623342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
SND1-IT1-201ENST00000623342 CCER1Q8TC90 406 aaPredicted RBP12.73□□□□□ -0.37
SND1-IT1-201ENST00000623342 KIF27Q86VH2 1401 aa12.72□□□□□ -0.37
SND1-IT1-201ENST00000623342 CADPSQ9ULU8 1353 aa12.71□□□□□ -0.38
SND1-IT1-201ENST00000623342 NESP48681 1621 aa12.69□□□□□ -0.38
SND1-IT1-201ENST00000623342 APLP2Q06481 763 aa12.66□□□□□ -0.38
SND1-IT1-201ENST00000623342 RANGAP1P46060 587 aaPredicted RBP12.64□□□□□ -0.39
SND1-IT1-201ENST00000623342 ARAP1Q96P48 1450 aa12.61□□□□□ -0.39
SND1-IT1-201ENST00000623342 CUX2O14529 1486 aa12.6□□□□□ -0.39
SND1-IT1-201ENST00000623342 FGD5Q6ZNL6 1462 aa12.59□□□□□ -0.39
SND1-IT1-201ENST00000623342 FANCD2Q9BXW9 1451 aa12.58□□□□□ -0.4
SND1-IT1-201ENST00000623342 IGF1RP08069 1367 aa12.57□□□□□ -0.4
SND1-IT1-201ENST00000623342 HNRNPUL2Q1KMD3 747 aaKnown RBP12.54□□□□□ -0.4
SND1-IT1-201ENST00000623342 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
SND1-IT1-201ENST00000623342 DNMBPQ6XZF7 1577 aa12.52□□□□□ -0.4
SND1-IT1-201ENST00000623342 CARMIL1Q5VZK9 1371 aa12.52□□□□□ -0.41
SND1-IT1-201ENST00000623342 TOPBP1Q92547 1522 aa12.49□□□□□ -0.41
SND1-IT1-201ENST00000623342 KANK4Q5T7N3 995 aaPredicted RBP12.47□□□□□ -0.41
SND1-IT1-201ENST00000623342 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
SND1-IT1-201ENST00000623342 ABCA10Q8WWZ4 1543 aa12.47□□□□□ -0.41
SND1-IT1-201ENST00000623342 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.41
SND1-IT1-201ENST00000623342 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.41
SND1-IT1-201ENST00000623342 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
SND1-IT1-201ENST00000623342 RRBP1Q9P2E9 1410 aaKnown RBP12.43□□□□□ -0.42
SND1-IT1-201ENST00000623342 URB2Q14146 1524 aaKnown RBP12.42□□□□□ -0.42
SND1-IT1-201ENST00000623342 MAP3K1Q13233 1512 aa12.41□□□□□ -0.42
SND1-IT1-201ENST00000623342 CUL7Q14999 1698 aa12.4□□□□□ -0.42
SND1-IT1-201ENST00000623342 DIEXFQ68CQ4 756 aaKnown RBP12.39□□□□□ -0.43
SND1-IT1-201ENST00000623342 TIAM1Q13009 1591 aa12.39□□□□□ -0.43
SND1-IT1-201ENST00000623342 WDR97A6NE52 1622 aa12.38□□□□□ -0.43
SND1-IT1-201ENST00000623342 FHAD1B1AJZ9 1412 aa12.38□□□□□ -0.43
SND1-IT1-201ENST00000623342 PDS5BQ9NTI5 1447 aa12.38□□□□□ -0.43
SND1-IT1-201ENST00000623342 ZNF316A6NFI3 1004 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms