RNA–Protein interactions for RNA: ENST00000622972.3

LINC00963-215, long intergenic non-protein coding RNA 963, humanhuman

TSL 5

Gene LINC00963, Length 444 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-215ENST00000622972 AEBP2Q6ZN18 517 aaPredicted RBP16.68■□□□□ 0.26
LINC00963-215ENST00000622972 CHIC1Q5VXU3 224 aa16.41■□□□□ 0.22
LINC00963-215ENST00000622972 PHF23Q9BUL5 403 aaPredicted RBP14.4□□□□□ -0.1
LINC00963-215ENST00000622972 NISCHQ9Y2I1 1504 aa14.3□□□□□ -0.12
LINC00963-215ENST00000622972 SENP3Q9H4L4 574 aaPredicted RBP14.21□□□□□ -0.13
LINC00963-215ENST00000622972 PLPPR3Q6T4P5 718 aa13.4□□□□□ -0.26
LINC00963-215ENST00000622972 FOXD1Q16676 465 aa13.14□□□□□ -0.31
LINC00963-215ENST00000622972 ABCC9O60706 1549 aa12.83□□□□□ -0.35
LINC00963-215ENST00000622972 CCDC180Q9P1Z9 1646 aa12.8□□□□□ -0.36
LINC00963-215ENST00000622972 ADRA2BP18089 450 aa12.7□□□□□ -0.38
LINC00963-215ENST00000622972 PPP6R1Q9UPN7 881 aa12.68□□□□□ -0.38
LINC00963-215ENST00000622972 PIAS4Q8N2W9 510 aaPredicted RBP12.45□□□□□ -0.42
LINC00963-215ENST00000622972 DCAF8L2P0C7V8 631 aa12.22□□□□□ -0.45
LINC00963-215ENST00000622972 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
LINC00963-215ENST00000622972 MSH5O43196 834 aa12.14□□□□□ -0.47
LINC00963-215ENST00000622972 NACADO15069 1562 aa12.11□□□□□ -0.47
LINC00963-215ENST00000622972 PABPN1Q86U42 306 aaKnown RBP eCLIP11.98□□□□□ -0.49
LINC00963-215ENST00000622972 DNAJC5BQ9UF47 199 aa11.96□□□□□ -0.49
LINC00963-215ENST00000622972 ZCCHC6Q5VYS8 1495 aaKnown RBP11.95□□□□□ -0.5
LINC00963-215ENST00000622972 UNC13AQ9UPW8 1703 aa11.91□□□□□ -0.5
LINC00963-215ENST00000622972 MYO15BQ96JP2 1530 aa11.9□□□□□ -0.5
LINC00963-215ENST00000622972 PPP4R3CPQ6ZMV5 832 aa11.8□□□□□ -0.52
LINC00963-215ENST00000622972 BICRAQ9NZM4 1560 aa11.79□□□□□ -0.52
LINC00963-215ENST00000622972 DCAF1Q9Y4B6 1507 aa11.79□□□□□ -0.52
LINC00963-215ENST00000622972 SCRIBQ14160 1630 aa11.73□□□□□ -0.53
LINC00963-215ENST00000622972 SCAF1Q9H7N4 1312 aaKnown RBP11.7□□□□□ -0.54
LINC00963-215ENST00000622972 SHROOM4Q9ULL8 1493 aa11.63□□□□□ -0.55
LINC00963-215ENST00000622972 KCNA4P22459 653 aa11.58□□□□□ -0.56
LINC00963-215ENST00000622972 CC2D2AQ9P2K1 1620 aa11.57□□□□□ -0.56
LINC00963-215ENST00000622972 NCBP3Q53F19 620 aaKnown RBP11.56□□□□□ -0.56
LINC00963-215ENST00000622972 CECR2Q9BXF3 1484 aa11.55□□□□□ -0.56
LINC00963-215ENST00000622972 EIF4G1Q04637 1599 aaKnown RBP11.54□□□□□ -0.56
LINC00963-215ENST00000622972 MAPK8IP2Q13387 824 aaPredicted RBP11.5□□□□□ -0.57
LINC00963-215ENST00000622972 CNKSR2Q8WXI2 1034 aa11.47□□□□□ -0.57
LINC00963-215ENST00000622972 DMRT2Q9Y5R5 561 aa11.33□□□□□ -0.6
LINC00963-215ENST00000622972 NPM3O75607 178 aaKnown RBP11.32□□□□□ -0.6
LINC00963-215ENST00000622972 RNF216Q9NWF9 866 aaPredicted RBP11.21□□□□□ -0.61
LINC00963-215ENST00000622972 NCAPD3P42695 1498 aa11.16□□□□□ -0.62
LINC00963-215ENST00000622972 SMARCA4P51532 1647 aa11.16□□□□□ -0.62
LINC00963-215ENST00000622972 SMARCA2P51531 1590 aa11.15□□□□□ -0.62
LINC00963-215ENST00000622972 ATAD2BQ9ULI0 1458 aa11.14□□□□□ -0.63
LINC00963-215ENST00000622972 HOXD11P31277 338 aaPredicted RBP11.12□□□□□ -0.63
LINC00963-215ENST00000622972 ERCC6Q03468 1493 aa11.12□□□□□ -0.63
LINC00963-215ENST00000622972 BAZ1AQ9NRL2 1556 aaPredicted RBP11.11□□□□□ -0.63
LINC00963-215ENST00000622972 SLC4A1APQ9BWU0 796 aaKnown RBP11.09□□□□□ -0.63
LINC00963-215ENST00000622972 HMGXB3Q12766 1538 aa11.09□□□□□ -0.63
LINC00963-215ENST00000622972 BAZ1BQ9UIG0 1483 aaKnown RBP11.08□□□□□ -0.64
LINC00963-215ENST00000622972 MROH2BQ7Z745 1585 aa11.05□□□□□ -0.64
LINC00963-215ENST00000622972 NESP48681 1621 aa11.02□□□□□ -0.65
LINC00963-215ENST00000622972 CUX2O14529 1486 aa11.01□□□□□ -0.65
LINC00963-215ENST00000622972 PEG3Q9GZU2 1588 aa10.99□□□□□ -0.65
LINC00963-215ENST00000622972 DNAJC5Q9H3Z4 198 aa10.98□□□□□ -0.65
LINC00963-215ENST00000622972 WIZO95785 1651 aa10.98□□□□□ -0.65
LINC00963-215ENST00000622972 LAMC3Q9Y6N6 1575 aa10.94□□□□□ -0.66
LINC00963-215ENST00000622972 DCAF8L1A6NGE4 600 aa10.92□□□□□ -0.66
LINC00963-215ENST00000622972 RSF1Q96T23 1441 aaPredicted RBP10.91□□□□□ -0.66
LINC00963-215ENST00000622972 PDS5BQ9NTI5 1447 aa10.9□□□□□ -0.66
LINC00963-215ENST00000622972 POTEDQ86YR6 584 aa10.88□□□□□ -0.67
LINC00963-215ENST00000622972 KIF21AQ7Z4S6 1674 aa10.88□□□□□ -0.67
LINC00963-215ENST00000622972 EHMT2Q96KQ7 1210 aa10.87□□□□□ -0.67
LINC00963-215ENST00000622972 CADPSQ9ULU8 1353 aa10.86□□□□□ -0.67
LINC00963-215ENST00000622972 THOC2Q8NI27 1593 aaKnown RBP10.86□□□□□ -0.67
LINC00963-215ENST00000622972 TOP2AP11388 1531 aaKnown RBP10.79□□□□□ -0.68
LINC00963-215ENST00000622972 MRC2Q9UBG0 1479 aa10.78□□□□□ -0.68
LINC00963-215ENST00000622972 CEP164Q9UPV0 1460 aa10.77□□□□□ -0.69
LINC00963-215ENST00000622972 FANCD2Q9BXW9 1451 aa10.74□□□□□ -0.69
LINC00963-215ENST00000622972 WDR62O43379 1518 aa10.73□□□□□ -0.69
LINC00963-215ENST00000622972 CFTRP13569 1480 aa10.72□□□□□ -0.69
LINC00963-215ENST00000622972 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
LINC00963-215ENST00000622972 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.67□□□□□ -0.7
LINC00963-215ENST00000622972 CSRNP3Q8WYN3 585 aa10.66□□□□□ -0.7
LINC00963-215ENST00000622972 SLC4A2P04920 1241 aa10.65□□□□□ -0.7
LINC00963-215ENST00000622972 CCDC88BA6NC98 1476 aa10.64□□□□□ -0.71
LINC00963-215ENST00000622972 PRDM2Q13029 1718 aa10.64□□□□□ -0.71
LINC00963-215ENST00000622972 URB2Q14146 1524 aaKnown RBP10.63□□□□□ -0.71
LINC00963-215ENST00000622972 ZBTB22O15209 634 aa10.62□□□□□ -0.71
LINC00963-215ENST00000622972 TRIM41Q8WV44 630 aa10.62□□□□□ -0.71
LINC00963-215ENST00000622972 SUPT5HO00267 1087 aaKnown RBP10.6□□□□□ -0.71
LINC00963-215ENST00000622972 OSCARQ8IYS5 282 aa10.58□□□□□ -0.72
LINC00963-215ENST00000622972 IFT140Q96RY7 1462 aa10.54□□□□□ -0.72
LINC00963-215ENST00000622972 TOPBP1Q92547 1522 aa10.53□□□□□ -0.72
LINC00963-215ENST00000622972 ABCC8Q09428 1581 aa10.52□□□□□ -0.72
LINC00963-215ENST00000622972 ZNF608Q9ULD9 1512 aaPredicted RBP10.5□□□□□ -0.73
LINC00963-215ENST00000622972 DNMBPQ6XZF7 1577 aa10.5□□□□□ -0.73
LINC00963-215ENST00000622972 MYCNP04198 464 aaPredicted RBP10.49□□□□□ -0.73
LINC00963-215ENST00000622972 FBLN2P98095 1184 aa10.46□□□□□ -0.73
LINC00963-215ENST00000622972 EIF4G3O43432 1585 aaKnown RBP10.45□□□□□ -0.74
LINC00963-215ENST00000622972 AQRO60306 1485 aaKnown RBP eCLIP10.43□□□□□ -0.74
LINC00963-215ENST00000622972 U3KPZ7 1027 aaPredicted RBP10.43□□□□□ -0.74
LINC00963-215ENST00000622972 POLA1P09884 1462 aaPredicted RBP10.42□□□□□ -0.74
LINC00963-215ENST00000622972 SOGA1O94964 1423 aa10.41□□□□□ -0.74
LINC00963-215ENST00000622972 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.41□□□□□ -0.74
LINC00963-215ENST00000622972 HNRNPUL2Q1KMD3 747 aaKnown RBP10.41□□□□□ -0.74
LINC00963-215ENST00000622972 RAD54L2Q9Y4B4 1467 aa10.41□□□□□ -0.74
LINC00963-215ENST00000622972 TARBP1Q13395 1621 aaKnown RBP10.4□□□□□ -0.74
LINC00963-215ENST00000622972 RIMBP3CA6NJZ7 1639 aa10.4□□□□□ -0.75
LINC00963-215ENST00000622972 RIMBP3BA6NNM3 1639 aa10.4□□□□□ -0.75
LINC00963-215ENST00000622972 RIMBP3Q9UFD9 1639 aa10.4□□□□□ -0.75
LINC00963-215ENST00000622972 TDRD9Q8NDG6 1382 aaKnown RBP10.39□□□□□ -0.75
LINC00963-215ENST00000622972 CHD1O14646 1710 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms