RNA–Protein interactions for RNA: ENST00000622057.4

TARDBP-227, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-227ENST00000622057 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.69□□□□□ -1.025e-8■■■■■ 204.6
TARDBP-227ENST00000622057 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.98□□□□□ -1.132e-11■■■■■ 42.5
TARDBP-227ENST00000622057 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.78□□□□□ -0.681e-28■■■■■ 32.6
TARDBP-227ENST00000622057 RBM22Q9NW64 420 aaKnown RBP eCLIP9.28□□□□□ -0.922e-7■■■■■ 31.6
TARDBP-227ENST00000622057 SMNDC1O75940 238 aaKnown RBP eCLIP8.46□□□□□ -1.062e-8■■■■■ 29.2
TARDBP-227ENST00000622057 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.01□□□□□ -0.977e-6■■■■■ 27.5
TARDBP-227ENST00000622057 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.78□□□□□ -13e-6■■■■□ 22.6
TARDBP-227ENST00000622057 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.88□□□□□ -0.831e-9■■■■□ 21.2
TARDBP-227ENST00000622057 GTF2F1P35269 517 aaKnown RBP eCLIP10.61□□□□□ -0.717e-26■■■□□ 18.2
TARDBP-227ENST00000622057 U2AF1Q01081 240 aaKnown RBP eCLIP12.48□□□□□ -0.413e-7■■■□□ 15.3
TARDBP-227ENST00000622057 UPF1Q92900 1129 aaKnown RBP eCLIP13.89□□□□□ -0.192e-11■■■□□ 15.1
TARDBP-227ENST00000622057 AQRO60306 1485 aaKnown RBP eCLIP16.97■□□□□ 0.315e-11■■□□□ 14.4
TARDBP-227ENST00000622057 TIA1P31483 386 aaKnown RBP eCLIP8.42□□□□□ -1.061e-8■■□□□ 14.3
TARDBP-227ENST00000622057 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.82□□□□□ -0.363e-7■■□□□ 13.1
TARDBP-227ENST00000622057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.58□□□□□ -0.082e-9■■□□□ 12.6
TARDBP-227ENST00000622057 PRPF4O43172 522 aaKnown RBP eCLIP8.86□□□□□ -0.992e-14■■□□□ 12.4
TARDBP-227ENST00000622057 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.37□□□□□ -1.072e-21■■□□□ 12.4
TARDBP-227ENST00000622057 CDC40O60508 579 aaKnown RBP eCLIP8.72□□□□□ -1.015e-6■■□□□ 12.3
TARDBP-227ENST00000622057 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.02□□□□□ -0.651e-11■■□□□ 11.7
TARDBP-227ENST00000622057 FXR2P51116 673 aaKnown RBP eCLIP10.25□□□□□ -0.772e-7■■□□□ 11.5
TARDBP-227ENST00000622057 SRSF1Q07955 248 aaKnown RBP eCLIP9.13□□□□□ -0.954e-8■□□□□ 11.3
TARDBP-227ENST00000622057 SF3B4Q15427 424 aaKnown RBP eCLIP8.53□□□□□ -1.042e-7■□□□□ 10.4
TARDBP-227ENST00000622057 KHSRPQ92945 711 aaKnown RBP eCLIP10.67□□□□□ -0.71e-9■□□□□ 10.4
TARDBP-227ENST00000622057 ZRANB2O95218 330 aaKnown RBP eCLIP9.11□□□□□ -0.955e-13■□□□□ 10.2
TARDBP-227ENST00000622057 G3BP1Q13283 466 aaKnown RBP eCLIP11.52□□□□□ -0.575e-9■□□□□ 10.1
TARDBP-227ENST00000622057 U2AF2P26368 475 aaKnown RBP eCLIP10.22□□□□□ -0.773e-10■□□□□ 10
TARDBP-227ENST00000622057 DDX6P26196 483 aaKnown RBP eCLIP10.02□□□□□ -0.815e-34■□□□□ 10
TARDBP-227ENST00000622057 SUB1P53999 127 aaKnown RBP eCLIP6.81□□□□□ -1.321e-11■□□□□ 9.4
TARDBP-227ENST00000622057 ZNF622Q969S3 477 aaKnown RBP eCLIP12.47□□□□□ -0.413e-23■□□□□ 9.1
TARDBP-227ENST00000622057 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.18□□□□□ -0.948e-12■□□□□ 8.9
TARDBP-227ENST00000622057 PPIGQ13427 754 aaKnown RBP eCLIP11□□□□□ -0.656e-7■□□□□ 8.8
TARDBP-227ENST00000622057 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.24□□□□□ -0.612e-12■□□□□ 8.7
TARDBP-227ENST00000622057 ILF3Q12906 894 aaKnown RBP eCLIP9.32□□□□□ -0.926e-6■□□□□ 8.6
TARDBP-227ENST00000622057 YBX3P16989 372 aaKnown RBP eCLIP12.8□□□□□ -0.368e-13■□□□□ 8.1
Retrieved 34 of 34 RNA–protein pairs in 7.9 ms