RNA–Protein interactions for RNA: ENST00000621715.4

TARDBP-225, Transcript of TAR DNA binding protein, humanhuman

TSL 3

Gene TARDBP, Length 816 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-225ENST00000621715 DDX3XO00571 662 aaKnown RBP eCLIP16.62■□□□□ 0.259e-31■■■■■ 37.6
TARDBP-225ENST00000621715 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.22■■■□□ 2.111e-7■■■■■ 34.9
TARDBP-225ENST00000621715 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.86□□□□□ -0.035e-9■■■■■ 33.2
TARDBP-225ENST00000621715 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.54■□□□□ 0.721e-28■■■■■ 32.6
TARDBP-225ENST00000621715 RBM22Q9NW64 420 aaKnown RBP eCLIP16.53■□□□□ 0.242e-7■■■■■ 31.6
TARDBP-225ENST00000621715 SMNDC1O75940 238 aaKnown RBP eCLIP15.13■□□□□ 0.012e-8■■■■■ 29.2
TARDBP-225ENST00000621715 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.79■□□□□ 0.123e-6■■■■□ 22.6
TARDBP-225ENST00000621715 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.7■□□□□ 0.421e-7■■■■□ 22.4
TARDBP-225ENST00000621715 DDX6P26196 483 aaKnown RBP eCLIP18■□□□□ 0.471e-7■■■■□ 21
TARDBP-225ENST00000621715 RBM15Q96T37 977 aaKnown RBP eCLIP16.87■□□□□ 0.299e-7■■■□□ 18.3
TARDBP-225ENST00000621715 NCBP2P52298 156 aaKnown RBP eCLIP14.96□□□□□ -0.011e-12■■■□□ 17.8
TARDBP-225ENST00000621715 GTF2F1P35269 517 aaKnown RBP eCLIP19.32■□□□□ 0.681e-25■■■□□ 17.1
TARDBP-225ENST00000621715 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.8■■□□□ 1.881e-6■■■□□ 15.4
TARDBP-225ENST00000621715 U2AF1Q01081 240 aaKnown RBP eCLIP22.42■■□□□ 1.183e-7■■■□□ 15.3
TARDBP-225ENST00000621715 UPF1Q92900 1129 aaKnown RBP eCLIP25.55■■□□□ 1.682e-11■■■□□ 15.1
TARDBP-225ENST00000621715 AQRO60306 1485 aaKnown RBP eCLIP31.21■■■□□ 2.592e-7■■□□□ 14.3
TARDBP-225ENST00000621715 TIA1P31483 386 aaKnown RBP eCLIP14.98□□□□□ -0.011e-8■■□□□ 14.3
TARDBP-225ENST00000621715 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.23■■□□□ 1.313e-7■■□□□ 13.6
TARDBP-225ENST00000621715 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.42■■□□□ 1.822e-9■■□□□ 13.4
TARDBP-225ENST00000621715 PRPF4O43172 522 aaKnown RBP eCLIP15.79■□□□□ 0.124e-24■■□□□ 13.1
TARDBP-225ENST00000621715 HNRNPMP52272 730 aaKnown RBP eCLIP27.37■■□□□ 1.977e-7■■□□□ 12.4
TARDBP-225ENST00000621715 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.03■□□□□ 0.81e-11■■□□□ 11.7
TARDBP-225ENST00000621715 FXR2P51116 673 aaKnown RBP eCLIP18.35■□□□□ 0.532e-7■■□□□ 11.5
TARDBP-225ENST00000621715 SRSF1Q07955 248 aaKnown RBP eCLIP16.79■□□□□ 0.284e-8■□□□□ 11.3
TARDBP-225ENST00000621715 WRNQ14191 1432 aaPredicted RBP eCLIP30.3■■■□□ 2.446e-7■□□□□ 11.3
TARDBP-225ENST00000621715 RPS3P23396 243 aaKnown RBP eCLIP15.86■□□□□ 0.133e-8■□□□□ 11
TARDBP-225ENST00000621715 SF3B4Q15427 424 aaKnown RBP eCLIP15.17■□□□□ 0.022e-7■□□□□ 10.4
TARDBP-225ENST00000621715 KHSRPQ92945 711 aaKnown RBP eCLIP19.61■□□□□ 0.731e-9■□□□□ 10.4
TARDBP-225ENST00000621715 ZRANB2O95218 330 aaKnown RBP eCLIP16.13■□□□□ 0.175e-13■□□□□ 10.2
TARDBP-225ENST00000621715 G3BP1Q13283 466 aaKnown RBP eCLIP20.59■□□□□ 0.895e-9■□□□□ 10.1
TARDBP-225ENST00000621715 U2AF2P26368 475 aaKnown RBP eCLIP18.27■□□□□ 0.523e-10■□□□□ 10
TARDBP-225ENST00000621715 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.17■□□□□ 0.181e-6■□□□□ 9.2
TARDBP-225ENST00000621715 ZNF622Q969S3 477 aaKnown RBP eCLIP22.58■■□□□ 1.213e-23■□□□□ 9.1
TARDBP-225ENST00000621715 PPIGQ13427 754 aaKnown RBP eCLIP19.92■□□□□ 0.786e-7■□□□□ 8.8
TARDBP-225ENST00000621715 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.12■□□□□ 0.812e-12■□□□□ 8.7
TARDBP-225ENST00000621715 ILF3Q12906 894 aaKnown RBP eCLIP16.69■□□□□ 0.266e-6■□□□□ 8.6
TARDBP-225ENST00000621715 CDC40O60508 579 aaKnown RBP eCLIP15.63■□□□□ 0.095e-11■□□□□ 8.5
Retrieved 37 of 37 RNA–protein pairs in 7.4 ms