RNA–Protein interactions for RNA: ENST00000621573.1

TARDBP-224, Transcript of TAR DNA binding protein, humanhuman

TSL 3

Gene TARDBP, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-224ENST00000621573 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.69□□□□□ -1.341e-41■■■■■ 46.1
TARDBP-224ENST00000621573 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.49□□□□□ -1.052e-21■■□□□ 12.4
TARDBP-224ENST00000621573 U2AF2P26368 475 aaKnown RBP eCLIP9.09□□□□□ -0.951e-14■□□□□ 11.3
TARDBP-224ENST00000621573 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.91□□□□□ -0.981e-13■■■■■ 35.6
TARDBP-224ENST00000621573 TARDBPQ13148 414 aaKnown RBP eCLIP7.86□□□□□ -1.151e-13■■■■■ 26.9
TARDBP-224ENST00000621573 SRSF1Q07955 248 aaKnown RBP eCLIP7.26□□□□□ -1.252e-13■■□□□ 11.9
TARDBP-224ENST00000621573 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.65□□□□□ -0.863e-13■□□□□ 8.3
TARDBP-224ENST00000621573 YBX3P16989 372 aaKnown RBP eCLIP10.19□□□□□ -0.788e-13■□□□□ 8.1
TARDBP-224ENST00000621573 GRSF1Q12849 480 aaKnown RBP eCLIP8.37□□□□□ -1.071e-11■■□□□ 12.1
TARDBP-224ENST00000621573 SUB1P53999 127 aaKnown RBP eCLIP6.21□□□□□ -1.421e-11■□□□□ 9.4
TARDBP-224ENST00000621573 EIF4G2P78344 907 aaKnown RBP eCLIP11.71□□□□□ -0.538e-11■■□□□ 12.1
TARDBP-224ENST00000621573 SRSF7Q16629 238 aaKnown RBP eCLIP6.5□□□□□ -1.372e-10■■■□□ 18.4
TARDBP-224ENST00000621573 FUSP35637 526 aaKnown RBP eCLIP5.33□□□□□ -1.563e-10■■□□□ 12.1
TARDBP-224ENST00000621573 LSM11P83369 360 aaKnown RBP eCLIP13.34□□□□□ -0.273e-9■■□□□ 11.9
TARDBP-224ENST00000621573 RBM22Q9NW64 420 aaKnown RBP eCLIP8.16□□□□□ -1.15e-8■□□□□ 9.1
TARDBP-224ENST00000621573 ZC3H11AO75152 810 aaKnown RBP eCLIP8.79□□□□□ -11e-7■■□□□ 12
TARDBP-224ENST00000621573 TIA1P31483 386 aaKnown RBP eCLIP7.54□□□□□ -1.24e-7■■■■□ 20.4
TARDBP-224ENST00000621573 TIAL1Q01085 375 aaKnown RBP eCLIP7.81□□□□□ -1.166e-7■■□□□ 11.7
TARDBP-224ENST00000621573 KHSRPQ92945 711 aaKnown RBP eCLIP13.94□□□□□ -0.188e-7■□□□□ 11
TARDBP-224ENST00000621573 SF3B4Q15427 424 aaKnown RBP eCLIP7.28□□□□□ -1.248e-7■■□□□ 12.3
TARDBP-224ENST00000621573 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.13□□□□□ -0.953e-6■□□□□ 10.1
TARDBP-224ENST00000621573 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.97□□□□□ -1.137e-6■■■■■ 27.5
TARDBP-224ENST00000621573 CDC40O60508 579 aaKnown RBP eCLIP7.38□□□□□ -1.238e-6■■□□□ 14.2
Retrieved 23 of 23 RNA–protein pairs in 5.7 ms