RNA–Protein interactions for RNA: ENST00000621013.4

SLC39A1-211, Transcript of solute carrier family 39 member 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SLC39A1, Length 2,322 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC39A1-211ENST00000621013 UPF1Q92900 1129 aaKnown RBP eCLIP17.45■□□□□ 0.381e-8■■■■■ 65.8
SLC39A1-211ENST00000621013 GRSF1Q12849 480 aaKnown RBP eCLIP17.36■□□□□ 0.374e-7■■■■■ 65.7
SLC39A1-211ENST00000621013 ZC3H11AO75152 810 aaKnown RBP eCLIP18.63■□□□□ 0.574e-7■■■■■ 41.2
SLC39A1-211ENST00000621013 FXR2P51116 673 aaKnown RBP eCLIP19.41■□□□□ 0.71e-8■■■■■ 32.1
SLC39A1-211ENST00000621013 SND1Q7KZF4 910 aaKnown RBP eCLIP19.37■□□□□ 0.695e-9■■■■■ 31.3
SLC39A1-211ENST00000621013 AKAP1Q92667 903 aaKnown RBP eCLIP16.34■□□□□ 0.214e-7■■■■■ 28
SLC39A1-211ENST00000621013 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.68■□□□□ 0.262e-8■■■■■ 27.4
SLC39A1-211ENST00000621013 AQRO60306 1485 aaKnown RBP eCLIP25.15■■□□□ 1.622e-6■■■■■ 26.9
SLC39A1-211ENST00000621013 RPS3P23396 243 aaKnown RBP eCLIP17.14■□□□□ 0.333e-8■■■■□ 23.3
SLC39A1-211ENST00000621013 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.3■■□□□ 1.326e-6■■■■□ 21.5
SLC39A1-211ENST00000621013 DDX3XO00571 662 aaKnown RBP eCLIP19.06■□□□□ 0.642e-8■■■■□ 21.2
SLC39A1-211ENST00000621013 PABPC4Q13310 644 aaKnown RBP eCLIP19.07■□□□□ 0.643e-8■■■■□ 20.9
SLC39A1-211ENST00000621013 TIA1P31483 386 aaKnown RBP eCLIP16.8■□□□□ 0.286e-7■■■□□ 18.9
SLC39A1-211ENST00000621013 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.77■□□□□ 0.591e-7■■■□□ 18.7
SLC39A1-211ENST00000621013 SUB1P53999 127 aaKnown RBP eCLIP14.13□□□□□ -0.158e-6■■■□□ 15.3
SLC39A1-211ENST00000621013 LARP4Q71RC2 724 aaKnown RBP eCLIP17.58■□□□□ 0.48e-7■■■□□ 15.3
SLC39A1-211ENST00000621013 PCBP2Q15366 365 aaKnown RBP eCLIP17.24■□□□□ 0.354e-14■■□□□ 14.1
SLC39A1-211ENST00000621013 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.73□□□□□ -0.373e-9■■□□□ 13.8
SLC39A1-211ENST00000621013 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18■□□□□ 0.472e-13■■□□□ 12
SLC39A1-211ENST00000621013 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.12■□□□□ 0.654e-7■□□□□ 9
SLC39A1-211ENST00000621013 DDX6P26196 483 aaKnown RBP eCLIP16.53■□□□□ 0.246e-7■□□□□ 8.8
Retrieved 21 of 21 RNA–protein pairs in 20.4 ms