RNA–Protein interactions for RNA: ENST00000619555.4

TARDBP-221, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-221ENST00000619555 DDX6P26196 483 aaKnown RBP eCLIP11.97□□□□□ -0.495e-34■□□□□ 10
TARDBP-221ENST00000619555 GTF2F1P35269 517 aaKnown RBP eCLIP12.67□□□□□ -0.387e-26■■■□□ 18.2
TARDBP-221ENST00000619555 ZNF622Q969S3 477 aaKnown RBP eCLIP14.87□□□□□ -0.033e-23■□□□□ 9.1
TARDBP-221ENST00000619555 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.07□□□□□ -0.82e-21■■□□□ 12.4
TARDBP-221ENST00000619555 PRPF4O43172 522 aaKnown RBP eCLIP10.58□□□□□ -0.722e-14■■□□□ 12.4
TARDBP-221ENST00000619555 TARDBPQ13148 414 aaKnown RBP eCLIP11.41□□□□□ -0.581e-13■■■■■ 26.9
TARDBP-221ENST00000619555 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.94□□□□□ -0.183e-13■□□□□ 8.3
TARDBP-221ENST00000619555 ZRANB2O95218 330 aaKnown RBP eCLIP10.94□□□□□ -0.665e-13■□□□□ 10.2
TARDBP-221ENST00000619555 YBX3P16989 372 aaKnown RBP eCLIP15.29■□□□□ 0.048e-13■□□□□ 8.1
TARDBP-221ENST00000619555 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.46□□□□□ -0.252e-12■□□□□ 8.7
TARDBP-221ENST00000619555 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.82□□□□□ -0.848e-12■■■■■ 45.2
TARDBP-221ENST00000619555 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.87□□□□□ -0.358e-12■■■■■ 35.2
TARDBP-221ENST00000619555 GRSF1Q12849 480 aaKnown RBP eCLIP11.95□□□□□ -0.51e-11■■□□□ 12.1
TARDBP-221ENST00000619555 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.25□□□□□ -0.611e-11■□□□□ 8.2
TARDBP-221ENST00000619555 SUB1P53999 127 aaKnown RBP eCLIP8.19□□□□□ -1.11e-11■□□□□ 9.4
TARDBP-221ENST00000619555 UPF1Q92900 1129 aaKnown RBP eCLIP16.55■□□□□ 0.242e-11■■■□□ 15.1
TARDBP-221ENST00000619555 PPIGQ13427 754 aaKnown RBP eCLIP13.13□□□□□ -0.314e-11■□□□□ 9.2
TARDBP-221ENST00000619555 AQRO60306 1485 aaKnown RBP eCLIP20.35■□□□□ 0.855e-11■■□□□ 14.4
TARDBP-221ENST00000619555 EIF4G2P78344 907 aaKnown RBP eCLIP15.4■□□□□ 0.068e-11■■□□□ 12.1
TARDBP-221ENST00000619555 U2AF2P26368 475 aaKnown RBP eCLIP12.28□□□□□ -0.442e-10■□□□□ 10.5
TARDBP-221ENST00000619555 SRSF7Q16629 238 aaKnown RBP eCLIP8.63□□□□□ -1.032e-10■■■□□ 18.4
TARDBP-221ENST00000619555 FUSP35637 526 aaKnown RBP eCLIP7.63□□□□□ -1.193e-10■■□□□ 12.1
TARDBP-221ENST00000619555 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.36■□□□□ 0.057e-10■■□□□ 14.4
TARDBP-221ENST00000619555 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.83□□□□□ -0.521e-9■■■■□ 21.2
TARDBP-221ENST00000619555 KHSRPQ92945 711 aaKnown RBP eCLIP12.74□□□□□ -0.371e-9■□□□□ 11
TARDBP-221ENST00000619555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.43■□□□□ 0.382e-9■■□□□ 12.6
TARDBP-221ENST00000619555 LSM11P83369 360 aaKnown RBP eCLIP9.71□□□□□ -0.863e-9■■□□□ 11.9
TARDBP-221ENST00000619555 SMNDC1O75940 238 aaKnown RBP eCLIP10.07□□□□□ -0.82e-8■■■■■ 29.2
TARDBP-221ENST00000619555 SRSF1Q07955 248 aaKnown RBP eCLIP10.89□□□□□ -0.673e-8■■□□□ 11.4
TARDBP-221ENST00000619555 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.42□□□□□ -0.745e-8■■■■■ 204.6
TARDBP-221ENST00000619555 ZC3H11AO75152 810 aaKnown RBP eCLIP12.49□□□□□ -0.411e-7■■□□□ 12
TARDBP-221ENST00000619555 RBM22Q9NW64 420 aaKnown RBP eCLIP11.11□□□□□ -0.631e-7■■■■□ 20.3
TARDBP-221ENST00000619555 FXR2P51116 673 aaKnown RBP eCLIP12.3□□□□□ -0.442e-7■■□□□ 11.5
TARDBP-221ENST00000619555 TIA1P31483 386 aaKnown RBP eCLIP10.1□□□□□ -0.792e-7■■■□□ 17.4
TARDBP-221ENST00000619555 U2AF1Q01081 240 aaKnown RBP eCLIP14.95□□□□□ -0.023e-7■■■□□ 15.3
TARDBP-221ENST00000619555 SF3B4Q15427 424 aaKnown RBP eCLIP10.16□□□□□ -0.784e-7■■□□□ 11.4
TARDBP-221ENST00000619555 TIAL1Q01085 375 aaKnown RBP eCLIP10.55□□□□□ -0.726e-7■■□□□ 11.7
TARDBP-221ENST00000619555 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.15□□□□□ -0.31e-6■□□□□ 10.9
TARDBP-221ENST00000619555 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.48□□□□□ -0.733e-6■■■■□ 20.3
TARDBP-221ENST00000619555 CDC40O60508 579 aaKnown RBP eCLIP10.39□□□□□ -0.755e-6■■□□□ 12.3
TARDBP-221ENST00000619555 ILF3Q12906 894 aaKnown RBP eCLIP11.13□□□□□ -0.636e-6■□□□□ 8.6
TARDBP-221ENST00000619555 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.77□□□□□ -0.697e-6■■■■■ 27.5
Retrieved 42 of 42 RNA–protein pairs in 67.5 ms