RNA–Protein interactions for RNA: ENST00000619151.4

BRF1-221, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 5 BASIC

Gene BRF1, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-221ENST00000619151 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.94■■■□□ 2.384e-7■■■■■ 173.6
BRF1-221ENST00000619151 SF3B1O75533 1304 aaKnown RBP eCLIP29.18■■■□□ 2.265e-6■■■■■ 60.9
BRF1-221ENST00000619151 DKC1O60832 514 aaKnown RBP eCLIP30.91■■■□□ 2.542e-6■■■■■ 56.4
BRF1-221ENST00000619151 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP29.01■■■□□ 2.232e-6■■■■■ 53.7
BRF1-221ENST00000619151 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP26.7■■□□□ 1.879e-7■■■■■ 51.2
BRF1-221ENST00000619151 EFTUD2Q15029 972 aaKnown RBP eCLIP28.21■■■□□ 2.118e-7■■■■■ 50.8
BRF1-221ENST00000619151 SF3A3Q12874 501 aaKnown RBP eCLIP27.53■■■□□ 22e-6■■■■■ 42.3
BRF1-221ENST00000619151 TBRG4Q969Z0 631 aaKnown RBP eCLIP27.8■■■□□ 2.044e-6■■■■■ 41.2
BRF1-221ENST00000619151 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.97■■■■■ 4.313e-6■■■■■ 37.9
BRF1-221ENST00000619151 PTBP1P26599 531 aaKnown RBP eCLIP24.28■■□□□ 1.486e-11■■■■■ 37.1
BRF1-221ENST00000619151 EIF4G2P78344 907 aaKnown RBP eCLIP39.33■■■■□ 3.891e-6■■■■■ 36.9
BRF1-221ENST00000619151 SLTMQ9NWH9 1034 aaKnown RBP eCLIP29.15■■■□□ 2.265e-7■■■■■ 36
BRF1-221ENST00000619151 NIPBLQ6KC79 2804 aaeCLIP21.5■■□□□ 1.031e-6■■■■■ 35.4
BRF1-221ENST00000619151 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.73■■■■■ 4.272e-7■■■■■ 33.4
BRF1-221ENST00000619151 TARDBPQ13148 414 aaKnown RBP eCLIP25.66■■□□□ 1.71e-10■■■■■ 33.4
BRF1-221ENST00000619151 UPF1Q92900 1129 aaKnown RBP eCLIP34.7■■■■□ 3.143e-7■■■■■ 30.9
BRF1-221ENST00000619151 SF3B4Q15427 424 aaKnown RBP eCLIP24.47■■□□□ 1.512e-7■■■■■ 29.4
BRF1-221ENST00000619151 HNRNPMP52272 730 aaKnown RBP eCLIP41.05■■■■■ 4.162e-6■■■■■ 28
BRF1-221ENST00000619151 AQRO60306 1485 aaKnown RBP eCLIP44.99■■■■■ 4.798e-7■■■■■ 27.9
BRF1-221ENST00000619151 DDX24Q9GZR7 859 aaKnown RBP eCLIP33.48■■■□□ 2.951e-6■■■■□ 26.5
BRF1-221ENST00000619151 DHX30Q7L2E3 1194 aaKnown RBP eCLIP31.08■■■□□ 2.574e-6■■■■□ 26
BRF1-221ENST00000619151 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP28.89■■■□□ 2.222e-7■■■■□ 25.7
BRF1-221ENST00000619151 MATR3P43243 847 aaKnown RBP eCLIP30.26■■■□□ 2.431e-8■■■■□ 25.4
BRF1-221ENST00000619151 AKAP1Q92667 903 aaKnown RBP eCLIP24.2■■□□□ 1.479e-8■■■■□ 24.9
BRF1-221ENST00000619151 YWHAGP61981 247 aaKnown RBP eCLIP28.94■■■□□ 2.222e-6■■■■□ 24.1
BRF1-221ENST00000619151 MTPAPQ9NVV4 582 aaKnown RBP eCLIP28.78■■■□□ 2.24e-6■■■■□ 23
BRF1-221ENST00000619151 RBFOX2O43251 390 aaKnown RBP eCLIP22.79■■□□□ 1.241e-8■■■■□ 22.2
BRF1-221ENST00000619151 NONOQ15233 471 aaKnown RBP eCLIP31.75■■■□□ 2.675e-6■■■■□ 20.4
BRF1-221ENST00000619151 EWSR1Q01844 656 aaKnown RBP eCLIP22.57■■□□□ 1.23e-6■■■■□ 20.1
BRF1-221ENST00000619151 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.73■■■■□ 3.315e-8■■■■□ 20
BRF1-221ENST00000619151 RBM15Q96T37 977 aaKnown RBP eCLIP28.59■■■□□ 2.176e-6■■■■□ 19.9
BRF1-221ENST00000619151 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP24.94■■□□□ 1.582e-6■■■■□ 19.6
BRF1-221ENST00000619151 FUSP35637 526 aaKnown RBP eCLIP17.56■□□□□ 0.42e-6■■■□□ 19.1
BRF1-221ENST00000619151 XRN2Q9H0D6 950 aaKnown RBP eCLIP30.27■■■□□ 2.447e-7■■■□□ 18.6
BRF1-221ENST00000619151 RBM22Q9NW64 420 aaKnown RBP eCLIP28.38■■■□□ 2.134e-7■■■□□ 18.1
BRF1-221ENST00000619151 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.2■■□□□ 1.151e-6■■■□□ 18
BRF1-221ENST00000619151 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP30.63■■■□□ 2.491e-6■■■□□ 18
BRF1-221ENST00000619151 U2AF2P26368 475 aaKnown RBP eCLIP32.1■■■□□ 2.731e-6■■■□□ 16.3
BRF1-221ENST00000619151 PPIGQ13427 754 aaKnown RBP eCLIP29.4■■■□□ 2.31e-6■■■□□ 15.7
BRF1-221ENST00000619151 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.06■■■■■ 44e-6■■□□□ 14.4
BRF1-221ENST00000619151 BUD13Q9BRD0 619 aaKnown RBP eCLIP29.36■■■□□ 2.292e-6■■□□□ 13.4
BRF1-221ENST00000619151 ZNF622Q969S3 477 aaKnown RBP eCLIP33.42■■■□□ 2.942e-8■■□□□ 12.3
BRF1-221ENST00000619151 XRCC6P12956 609 aaKnown RBP eCLIP31.53■■■□□ 2.642e-6■■□□□ 12.3
BRF1-221ENST00000619151 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP23.79■■□□□ 1.41e-10■■□□□ 11.6
BRF1-221ENST00000619151 HLTFQ14527 1009 aaKnown RBP eCLIP28.94■■■□□ 2.221e-6■■□□□ 11.5
BRF1-221ENST00000619151 PUM1Q14671 1186 aaKnown RBP eCLIP25.87■■□□□ 1.735e-6■□□□□ 10.2
BRF1-221ENST00000619151 XPO5Q9HAV4 1204 aaKnown RBP eCLIP32.15■■■□□ 2.743e-6■□□□□ 9.8
BRF1-221ENST00000619151 HNRNPLP14866 589 aaKnown RBP eCLIP27.65■■■□□ 2.023e-6■□□□□ 8.7
Retrieved 48 of 48 RNA–protein pairs in 8.9 ms