RNA–Protein interactions for RNA: ENST00000618606.1

TARDBP-220, Transcript of TAR DNA binding protein, humanhuman

TSL 2

Gene TARDBP, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-220ENST00000618606 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.24□□□□□ -1.891e-28■■■■■ 32.6
TARDBP-220ENST00000618606 ZNF622Q969S3 477 aaKnown RBP eCLIP2.21□□□□□ -2.063e-23■□□□□ 9.1
TARDBP-220ENST00000618606 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.22□□□□□ -1.892e-12■□□□□ 8.7
TARDBP-220ENST00000618606 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.27□□□□□ -2.051e-11■□□□□ 9.3
TARDBP-220ENST00000618606 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.05□□□□□ -2.44e-11■■■■■ 47.8
TARDBP-220ENST00000618606 AQRO60306 1485 aaKnown RBP eCLIP1.43□□□□□ -2.185e-11■■□□□ 14.4
TARDBP-220ENST00000618606 SF3B4Q15427 424 aaKnown RBP eCLIP3.22□□□□□ -1.895e-10■□□□□ 8.2
TARDBP-220ENST00000618606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.28■□□□□ 0.042e-9■■□□□ 12.1
TARDBP-220ENST00000618606 G3BP1Q13283 466 aaKnown RBP eCLIP2.53□□□□□ -25e-9■□□□□ 10.1
TARDBP-220ENST00000618606 SRSF1Q07955 248 aaKnown RBP eCLIP3.69□□□□□ -1.821e-7■□□□□ 10.9
TARDBP-220ENST00000618606 RBM22Q9NW64 420 aaKnown RBP eCLIP1.34□□□□□ -2.192e-7■■■■■ 31.6
TARDBP-220ENST00000618606 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.18□□□□□ -0.624e-7■■□□□ 11.4
TARDBP-220ENST00000618606 PPIGQ13427 754 aaKnown RBP eCLIP2.85□□□□□ -1.956e-7■□□□□ 8.8
TARDBP-220ENST00000618606 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.18□□□□□ -1.12e-6■■■■□ 20.4
Retrieved 14 of 14 RNA–protein pairs in 4.7 ms