RNA–Protein interactions for RNA: ENST00000617172.4

TARDBP-218, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 980 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-218ENST00000617172 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.07□□□□□ -0.965e-8■■■■■ 204.6
TARDBP-218ENST00000617172 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.23□□□□□ -1.098e-12■■■■■ 44.5
TARDBP-218ENST00000617172 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.01□□□□□ -0.658e-12■■■■■ 35.2
TARDBP-218ENST00000617172 SMNDC1O75940 238 aaKnown RBP eCLIP8.72□□□□□ -1.012e-8■■■■■ 29.2
TARDBP-218ENST00000617172 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.42□□□□□ -0.97e-6■■■■■ 27.5
TARDBP-218ENST00000617172 RBM22Q9NW64 420 aaKnown RBP eCLIP9.67□□□□□ -0.861e-7■■■■□ 22.6
TARDBP-218ENST00000617172 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.12□□□□□ -0.953e-6■■■■□ 22.6
TARDBP-218ENST00000617172 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.21□□□□□ -0.771e-9■■■■□ 21.2
TARDBP-218ENST00000617172 TARDBPQ13148 414 aaKnown RBP eCLIP9.79□□□□□ -0.842e-18■■■■□ 20.4
TARDBP-218ENST00000617172 SRSF7Q16629 238 aaKnown RBP eCLIP7.52□□□□□ -1.212e-10■■■□□ 18.4
TARDBP-218ENST00000617172 GTF2F1P35269 517 aaKnown RBP eCLIP10.8□□□□□ -0.687e-26■■■□□ 18.2
TARDBP-218ENST00000617172 TIA1P31483 386 aaKnown RBP eCLIP8.84□□□□□ -0.992e-7■■■□□ 17.4
TARDBP-218ENST00000617172 U2AF1Q01081 240 aaKnown RBP eCLIP12.93□□□□□ -0.343e-7■■■□□ 15.3
TARDBP-218ENST00000617172 UPF1Q92900 1129 aaKnown RBP eCLIP14□□□□□ -0.172e-11■■■□□ 15.1
TARDBP-218ENST00000617172 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.365e-11■■□□□ 14.4
TARDBP-218ENST00000617172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.293e-7■■□□□ 13.1
TARDBP-218ENST00000617172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.93□□□□□ -0.022e-9■■□□□ 12.6
TARDBP-218ENST00000617172 PRPF4O43172 522 aaKnown RBP eCLIP9.25□□□□□ -0.932e-14■■□□□ 12.4
TARDBP-218ENST00000617172 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.82□□□□□ -12e-21■■□□□ 12.4
TARDBP-218ENST00000617172 CDC40O60508 579 aaKnown RBP eCLIP8.96□□□□□ -0.985e-6■■□□□ 12.3
TARDBP-218ENST00000617172 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.23□□□□□ -0.611e-11■■□□□ 11.7
TARDBP-218ENST00000617172 TIAL1Q01085 375 aaKnown RBP eCLIP9.19□□□□□ -0.946e-7■■□□□ 11.7
TARDBP-218ENST00000617172 FXR2P51116 673 aaKnown RBP eCLIP10.73□□□□□ -0.692e-7■■□□□ 11.5
TARDBP-218ENST00000617172 SRSF1Q07955 248 aaKnown RBP eCLIP9.23□□□□□ -0.934e-8■□□□□ 11.3
TARDBP-218ENST00000617172 EIF4G2P78344 907 aaKnown RBP eCLIP13.41□□□□□ -0.261e-10■□□□□ 11
TARDBP-218ENST00000617172 SF3B4Q15427 424 aaKnown RBP eCLIP8.9□□□□□ -0.982e-7■□□□□ 10.4
TARDBP-218ENST00000617172 KHSRPQ92945 711 aaKnown RBP eCLIP10.76□□□□□ -0.691e-9■□□□□ 10.4
TARDBP-218ENST00000617172 ZRANB2O95218 330 aaKnown RBP eCLIP9.6□□□□□ -0.875e-13■□□□□ 10.2
TARDBP-218ENST00000617172 G3BP1Q13283 466 aaKnown RBP eCLIP11.97□□□□□ -0.495e-9■□□□□ 10.1
TARDBP-218ENST00000617172 U2AF2P26368 475 aaKnown RBP eCLIP10.74□□□□□ -0.693e-10■□□□□ 10
TARDBP-218ENST00000617172 DDX6P26196 483 aaKnown RBP eCLIP10.4□□□□□ -0.745e-34■□□□□ 10
TARDBP-218ENST00000617172 SUB1P53999 127 aaKnown RBP eCLIP7.22□□□□□ -1.251e-11■□□□□ 9.4
TARDBP-218ENST00000617172 ZNF622Q969S3 477 aaKnown RBP eCLIP12.72□□□□□ -0.373e-23■□□□□ 9.1
TARDBP-218ENST00000617172 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.74□□□□□ -0.858e-12■□□□□ 8.9
TARDBP-218ENST00000617172 PPIGQ13427 754 aaKnown RBP eCLIP11.28□□□□□ -0.66e-7■□□□□ 8.8
TARDBP-218ENST00000617172 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.72□□□□□ -0.532e-12■□□□□ 8.7
TARDBP-218ENST00000617172 ILF3Q12906 894 aaKnown RBP eCLIP9.67□□□□□ -0.866e-6■□□□□ 8.6
TARDBP-218ENST00000617172 YBX3P16989 372 aaKnown RBP eCLIP12.97□□□□□ -0.338e-13■□□□□ 8.1
Retrieved 38 of 38 RNA–protein pairs in 8.2 ms