RNA–Protein interactions for RNA: ENST00000617022.4

DDB2-212, Transcript of damage specific DNA binding protein 2, humanhuman

TSL 2

Gene DDB2, Length 2,181 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB2-212ENST00000617022 RBM15Q96T37 977 aaKnown RBP eCLIP16.2■□□□□ 0.185e-14■■■■□ 24.1
DDB2-212ENST00000617022 PTBP1P26599 531 aaKnown RBP eCLIP14.45□□□□□ -0.14e-11■■□□□ 13.1
DDB2-212ENST00000617022 AATFQ9NY61 560 aaKnown RBP eCLIP18.94■□□□□ 0.623e-10■■■■□ 23.7
DDB2-212ENST00000617022 LSM11P83369 360 aaKnown RBP eCLIP14.55□□□□□ -0.084e-10■□□□□ 8.1
DDB2-212ENST00000617022 KHSRPQ92945 711 aaKnown RBP eCLIP16.68■□□□□ 0.265e-10■■□□□ 14
DDB2-212ENST00000617022 MATR3P43243 847 aaKnown RBP eCLIP17.32■□□□□ 0.362e-9■■■■■ 33.8
DDB2-212ENST00000617022 HNRNPMP52272 730 aaKnown RBP eCLIP23.72■■□□□ 1.392e-9■■□□□ 11.6
DDB2-212ENST00000617022 SRSF1Q07955 248 aaKnown RBP eCLIP13.4□□□□□ -0.263e-9■■■■■ 37.2
DDB2-212ENST00000617022 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.2■□□□□ 0.343e-9■■■■■ 197.7
DDB2-212ENST00000617022 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.62■□□□□ 0.411e-8■■■□□ 15.5
DDB2-212ENST00000617022 PCBP2Q15366 365 aaKnown RBP eCLIP15.48■□□□□ 0.072e-8■□□□□ 8.6
DDB2-212ENST00000617022 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.76■□□□□ 0.276e-8■■■■■ 29.1
DDB2-212ENST00000617022 SRSF9Q13242 221 aaKnown RBP eCLIP11.6□□□□□ -0.557e-8■■□□□ 12.7
DDB2-212ENST00000617022 AQRO60306 1485 aaKnown RBP eCLIP25.68■■□□□ 1.71e-7■■■■■ 29.2
DDB2-212ENST00000617022 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.78□□□□□ -0.361e-7■□□□□ 10
DDB2-212ENST00000617022 SF3B4Q15427 424 aaKnown RBP eCLIP15.21■□□□□ 0.032e-7■■■■□ 24.8
DDB2-212ENST00000617022 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.55■□□□□ 0.883e-7■□□□□ 10.1
DDB2-212ENST00000617022 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.2■■□□□ 1.33e-7■■■□□ 18.8
DDB2-212ENST00000617022 PPIGQ13427 754 aaKnown RBP eCLIP16.78■□□□□ 0.285e-7■■■□□ 15.7
DDB2-212ENST00000617022 EFTUD2Q15029 972 aaKnown RBP eCLIP16.04■□□□□ 0.166e-7■■■■□ 20.4
DDB2-212ENST00000617022 U2AF2P26368 475 aaKnown RBP eCLIP18.28■□□□□ 0.521e-6■■□□□ 12.7
DDB2-212ENST00000617022 RBM5P52756 815 aaKnown RBP eCLIP18.79■□□□□ 0.61e-6■■■■□ 26.4
DDB2-212ENST00000617022 TAF15Q92804 592 aaKnown RBP eCLIP12.82□□□□□ -0.361e-6■□□□□ 9.1
DDB2-212ENST00000617022 ZNF622Q969S3 477 aaKnown RBP eCLIP19.23■□□□□ 0.672e-6■□□□□ 9.4
DDB2-212ENST00000617022 SF3A3Q12874 501 aaKnown RBP eCLIP16.26■□□□□ 0.192e-6■■□□□ 12.3
DDB2-212ENST00000617022 ILF3Q12906 894 aaKnown RBP eCLIP15.41■□□□□ 0.063e-6■■■■□ 26.5
DDB2-212ENST00000617022 U2AF1Q01081 240 aaKnown RBP eCLIP21.12■□□□□ 0.973e-6■■■■□ 20.8
DDB2-212ENST00000617022 PRPF4O43172 522 aaKnown RBP eCLIP15.99■□□□□ 0.153e-6■■□□□ 12
DDB2-212ENST00000617022 XRCC6P12956 609 aaKnown RBP eCLIP19.33■□□□□ 0.694e-6■■■■□ 25.4
DDB2-212ENST00000617022 PCBP1Q15365 356 aaKnown RBP eCLIP17.19■□□□□ 0.349e-6■■■□□ 18.2
Retrieved 30 of 30 RNA–protein pairs in 15.5 ms