RNA–Protein interactions for RNA: ENST00000616545.4

TARDBP-217, Transcript of TAR DNA binding protein, humanhuman

TSL 5 BASIC

Gene TARDBP, Length 920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-217ENST00000616545 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.14□□□□□ -0.635e-8■■■■■ 204.6
TARDBP-217ENST00000616545 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.49□□□□□ -0.892e-9■■■■■ 44.5
TARDBP-217ENST00000616545 DDX3XO00571 662 aaKnown RBP eCLIP12.35□□□□□ -0.433e-30■■■■■ 33.2
TARDBP-217ENST00000616545 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.53□□□□□ -0.41e-28■■■■■ 32.6
TARDBP-217ENST00000616545 RBM22Q9NW64 420 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■■■■■ 31.6
TARDBP-217ENST00000616545 SMNDC1O75940 238 aaKnown RBP eCLIP10.25□□□□□ -0.772e-8■■■■■ 29.2
TARDBP-217ENST00000616545 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.64□□□□□ -0.557e-6■■■■■ 27.5
TARDBP-217ENST00000616545 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.59□□□□□ -0.713e-6■■■■□ 22.6
TARDBP-217ENST00000616545 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.43□□□□□ -0.421e-7■■■■□ 22.4
TARDBP-217ENST00000616545 GTF2F1P35269 517 aaKnown RBP eCLIP12.12□□□□□ -0.477e-26■■■□□ 18.2
TARDBP-217ENST00000616545 U2AF1Q01081 240 aaKnown RBP eCLIP15.5■□□□□ 0.073e-7■■■□□ 15.3
TARDBP-217ENST00000616545 UPF1Q92900 1129 aaKnown RBP eCLIP14.7□□□□□ -0.062e-11■■■□□ 15.1
TARDBP-217ENST00000616545 AQRO60306 1485 aaKnown RBP eCLIP19.16■□□□□ 0.662e-7■■□□□ 14.3
TARDBP-217ENST00000616545 TIA1P31483 386 aaKnown RBP eCLIP11.09□□□□□ -0.631e-8■■□□□ 14.3
TARDBP-217ENST00000616545 TIAL1Q01085 375 aaKnown RBP eCLIP11.46□□□□□ -0.576e-7■■□□□ 13.8
TARDBP-217ENST00000616545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.38■□□□□ 0.053e-7■■□□□ 13.6
TARDBP-217ENST00000616545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.332e-9■■□□□ 13.4
TARDBP-217ENST00000616545 HNRNPMP52272 730 aaKnown RBP eCLIP17.57■□□□□ 0.41e-6■■□□□ 12.6
TARDBP-217ENST00000616545 PRPF4O43172 522 aaKnown RBP eCLIP11.46□□□□□ -0.572e-14■■□□□ 12.4
TARDBP-217ENST00000616545 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.05□□□□□ -0.642e-21■■□□□ 12.4
TARDBP-217ENST00000616545 CDC40O60508 579 aaKnown RBP eCLIP10.62□□□□□ -0.715e-6■■□□□ 12.3
TARDBP-217ENST00000616545 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.52□□□□□ -0.411e-11■■□□□ 11.7
TARDBP-217ENST00000616545 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.32e-7■■□□□ 11.5
TARDBP-217ENST00000616545 SRSF1Q07955 248 aaKnown RBP eCLIP10.03□□□□□ -0.84e-8■□□□□ 11.3
TARDBP-217ENST00000616545 SF3B4Q15427 424 aaKnown RBP eCLIP10.5□□□□□ -0.732e-7■□□□□ 10.4
TARDBP-217ENST00000616545 KHSRPQ92945 711 aaKnown RBP eCLIP12.21□□□□□ -0.451e-9■□□□□ 10.4
TARDBP-217ENST00000616545 DDX6P26196 483 aaKnown RBP eCLIP12.18□□□□□ -0.461e-8■□□□□ 10.3
TARDBP-217ENST00000616545 ZRANB2O95218 330 aaKnown RBP eCLIP12.11□□□□□ -0.475e-13■□□□□ 10.2
TARDBP-217ENST00000616545 G3BP1Q13283 466 aaKnown RBP eCLIP14.44□□□□□ -0.15e-9■□□□□ 10.1
TARDBP-217ENST00000616545 U2AF2P26368 475 aaKnown RBP eCLIP13.38□□□□□ -0.273e-10■□□□□ 10
TARDBP-217ENST00000616545 SUB1P53999 127 aaKnown RBP eCLIP9.22□□□□□ -0.931e-11■□□□□ 9.4
TARDBP-217ENST00000616545 ZNF622Q969S3 477 aaKnown RBP eCLIP14.32□□□□□ -0.123e-23■□□□□ 9.1
TARDBP-217ENST00000616545 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.6□□□□□ -0.392e-10■□□□□ 9.1
TARDBP-217ENST00000616545 PPIGQ13427 754 aaKnown RBP eCLIP12.64□□□□□ -0.396e-7■□□□□ 8.8
TARDBP-217ENST00000616545 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.13□□□□□ -0.152e-12■□□□□ 8.7
TARDBP-217ENST00000616545 NCBP2P52298 156 aaKnown RBP eCLIP10.94□□□□□ -0.669e-12■□□□□ 8.6
TARDBP-217ENST00000616545 ILF3Q12906 894 aaKnown RBP eCLIP11.43□□□□□ -0.586e-6■□□□□ 8.6
TARDBP-217ENST00000616545 YBX3P16989 372 aaKnown RBP eCLIP14.04□□□□□ -0.168e-13■□□□□ 8.1
Retrieved 38 of 38 RNA–protein pairs in 7.8 ms