RNA–Protein interactions for RNA: ENST00000615468.4

TNFAIP3-208, Transcript of TNF alpha induced protein 3, humanhuman

TSL 5 BASIC

Gene TNFAIP3, Length 3,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-208ENST00000615468 NISCHQ9Y2I1 1504 aa19.63■□□□□ 0.73
TNFAIP3-208ENST00000615468 HRCP23327 699 aa17.47■□□□□ 0.39
TNFAIP3-208ENST00000615468 DCAF8L2P0C7V8 631 aa17.41■□□□□ 0.38
TNFAIP3-208ENST00000615468 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
TNFAIP3-208ENST00000615468 PPARGC1BQ86YN6 1023 aaKnown RBP17.27■□□□□ 0.35
TNFAIP3-208ENST00000615468 SHROOM4Q9ULL8 1493 aa17.25■□□□□ 0.35
TNFAIP3-208ENST00000615468 PCGF6Q9BYE7 350 aa17.22■□□□□ 0.35
TNFAIP3-208ENST00000615468 SUPT5HO00267 1087 aaKnown RBP17.01■□□□□ 0.31
TNFAIP3-208ENST00000615468 MYT1Q01538 1121 aa16.76■□□□□ 0.27
TNFAIP3-208ENST00000615468 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
TNFAIP3-208ENST00000615468 CHIC1Q5VXU3 224 aa16.52■□□□□ 0.24
TNFAIP3-208ENST00000615468 CCDC180Q9P1Z9 1646 aa16.51■□□□□ 0.23
TNFAIP3-208ENST00000615468 MYO15BQ96JP2 1530 aa16.49■□□□□ 0.23
TNFAIP3-208ENST00000615468 ZCCHC6Q5VYS8 1495 aaKnown RBP16.44■□□□□ 0.22
TNFAIP3-208ENST00000615468 TRIM26Q12899 539 aaPredicted RBP16.4■□□□□ 0.22
TNFAIP3-208ENST00000615468 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
TNFAIP3-208ENST00000615468 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
TNFAIP3-208ENST00000615468 ABCC9O60706 1549 aa16.34■□□□□ 0.21
TNFAIP3-208ENST00000615468 GTF3C3Q9Y5Q9 886 aa16.26■□□□□ 0.19
TNFAIP3-208ENST00000615468 ACIN1Q9UKV3 1341 aaKnown RBP16.25■□□□□ 0.19
TNFAIP3-208ENST00000615468 NEUROD1Q13562 356 aa16.22■□□□□ 0.19
TNFAIP3-208ENST00000615468 CENPBP07199 599 aaPredicted RBP16.17■□□□□ 0.18
TNFAIP3-208ENST00000615468 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
TNFAIP3-208ENST00000615468 EHMT2Q96KQ7 1210 aa15.95■□□□□ 0.14
TNFAIP3-208ENST00000615468 SCRIBQ14160 1630 aa15.95■□□□□ 0.14
TNFAIP3-208ENST00000615468 YTHDC1Q96MU7 727 aaKnown RBP15.94■□□□□ 0.14
TNFAIP3-208ENST00000615468 DIEXFQ68CQ4 756 aaKnown RBP15.92■□□□□ 0.14
TNFAIP3-208ENST00000615468 CCER1Q8TC90 406 aaPredicted RBP15.88■□□□□ 0.13
TNFAIP3-208ENST00000615468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.84■□□□□ 0.13
TNFAIP3-208ENST00000615468 FAM9AQ8IZU1 332 aaPredicted RBP15.82■□□□□ 0.12
TNFAIP3-208ENST00000615468 PABPN1Q86U42 306 aaKnown RBP eCLIP15.79■□□□□ 0.12
TNFAIP3-208ENST00000615468 BCL11AQ9H165 835 aa15.71■□□□□ 0.1
TNFAIP3-208ENST00000615468 TTBK1Q5TCY1 1321 aaPredicted RBP15.68■□□□□ 0.1
TNFAIP3-208ENST00000615468 TRIM41Q8WV44 630 aa15.58■□□□□ 0.09
TNFAIP3-208ENST00000615468 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
TNFAIP3-208ENST00000615468 NACADO15069 1562 aa15.55■□□□□ 0.08
TNFAIP3-208ENST00000615468 RSF1Q96T23 1441 aaPredicted RBP15.53■□□□□ 0.08
TNFAIP3-208ENST00000615468 ANP32EQ9BTT0 268 aa15.5■□□□□ 0.07
TNFAIP3-208ENST00000615468 RB1CC1Q8TDY2 1594 aa15.47■□□□□ 0.07
TNFAIP3-208ENST00000615468 ZNF316A6NFI3 1004 aaPredicted RBP15.46■□□□□ 0.07
TNFAIP3-208ENST00000615468 MIER1Q8N108 512 aa15.44■□□□□ 0.06
TNFAIP3-208ENST00000615468 CSRNP3Q8WYN3 585 aa15.38■□□□□ 0.05
TNFAIP3-208ENST00000615468 MROH2BQ7Z745 1585 aa15.36■□□□□ 0.05
TNFAIP3-208ENST00000615468 SUPT16HQ9Y5B9 1047 aaKnown RBP15.28■□□□□ 0.04
TNFAIP3-208ENST00000615468 TSHZ2Q9NRE2 1034 aa15.28■□□□□ 0.04
TNFAIP3-208ENST00000615468 BCANQ96GW7 911 aa15.23■□□□□ 0.03
TNFAIP3-208ENST00000615468 WIZO95785 1651 aa15.22■□□□□ 0.03
TNFAIP3-208ENST00000615468 PRKCSHP14314 528 aaPredicted RBP15.21■□□□□ 0.03
TNFAIP3-208ENST00000615468 CLSPNQ9HAW4 1339 aa15.1■□□□□ 0.01
TNFAIP3-208ENST00000615468 RANGAP1P46060 587 aaPredicted RBP15.1■□□□□ 0.01
TNFAIP3-208ENST00000615468 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
TNFAIP3-208ENST00000615468 BAZ1AQ9NRL2 1556 aaPredicted RBP15.09■□□□□ 0.01
TNFAIP3-208ENST00000615468 ERICH6Q7L0X2 663 aa15.07■□□□□ 0
TNFAIP3-208ENST00000615468 FKBP8Q14318 412 aa14.99□□□□□ -0.01
TNFAIP3-208ENST00000615468 UNC13AQ9UPW8 1703 aa14.98□□□□□ -0.01
TNFAIP3-208ENST00000615468 CCDC88BA6NC98 1476 aa14.97□□□□□ -0.01
TNFAIP3-208ENST00000615468 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
TNFAIP3-208ENST00000615468 UBTFP17480 764 aaKnown RBP14.96□□□□□ -0.01
TNFAIP3-208ENST00000615468 NEFLP07196 543 aa14.96□□□□□ -0.01
TNFAIP3-208ENST00000615468 RBM19Q9Y4C8 960 aaKnown RBP14.96□□□□□ -0.02
TNFAIP3-208ENST00000615468 BICRAQ9NZM4 1560 aa14.95□□□□□ -0.02
TNFAIP3-208ENST00000615468 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
TNFAIP3-208ENST00000615468 ITGAEP38570 1179 aa14.92□□□□□ -0.02
TNFAIP3-208ENST00000615468 TOP2AP11388 1531 aaKnown RBP14.86□□□□□ -0.03
TNFAIP3-208ENST00000615468 BAZ1BQ9UIG0 1483 aaKnown RBP14.85□□□□□ -0.03
TNFAIP3-208ENST00000615468 ATAD2BQ9ULI0 1458 aa14.8□□□□□ -0.04
TNFAIP3-208ENST00000615468 SMARCA2P51531 1590 aa14.78□□□□□ -0.04
TNFAIP3-208ENST00000615468 KCNH8Q96L42 1107 aa14.78□□□□□ -0.04
TNFAIP3-208ENST00000615468 SOGA1O94964 1423 aa14.78□□□□□ -0.04
TNFAIP3-208ENST00000615468 APLP2Q06481 763 aa14.76□□□□□ -0.05
TNFAIP3-208ENST00000615468 ANO8Q9HCE9 1232 aaPredicted RBP14.76□□□□□ -0.05
TNFAIP3-208ENST00000615468 MSH5O43196 834 aa14.75□□□□□ -0.05
TNFAIP3-208ENST00000615468 DEKP35659 375 aaKnown RBP14.74□□□□□ -0.05
TNFAIP3-208ENST00000615468 CEP162Q5TB80 1403 aa14.7□□□□□ -0.06
TNFAIP3-208ENST00000615468 RUSC2Q8N2Y8 1516 aa14.7□□□□□ -0.06
TNFAIP3-208ENST00000615468 WRNQ14191 1432 aaPredicted RBP eCLIP14.69□□□□□ -0.06
TNFAIP3-208ENST00000615468 TRIM52Q96A61 297 aa14.69□□□□□ -0.06
TNFAIP3-208ENST00000615468 CDK11AQ9UQ88 783 aaPredicted RBP14.68□□□□□ -0.06
TNFAIP3-208ENST00000615468 NBR1Q14596 966 aa14.67□□□□□ -0.06
TNFAIP3-208ENST00000615468 MYT1LQ9UL68 1186 aa14.63□□□□□ -0.07
TNFAIP3-208ENST00000615468 CCDC136Q96JN2 1154 aa14.62□□□□□ -0.07
TNFAIP3-208ENST00000615468 EIF4G1Q04637 1599 aaKnown RBP14.62□□□□□ -0.07
TNFAIP3-208ENST00000615468 IRX6P78412 446 aaPredicted RBP14.61□□□□□ -0.07
TNFAIP3-208ENST00000615468 DDX10Q13206 875 aaKnown RBP14.6□□□□□ -0.07
TNFAIP3-208ENST00000615468 SALL2Q9Y467 1007 aaPredicted RBP14.58□□□□□ -0.08
TNFAIP3-208ENST00000615468 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
TNFAIP3-208ENST00000615468 DNAJC5BQ9UF47 199 aa14.57□□□□□ -0.08
TNFAIP3-208ENST00000615468 FANCIQ9NVI1 1328 aa14.55□□□□□ -0.08
TNFAIP3-208ENST00000615468 ATP1B4Q9UN42 357 aaPredicted RBP14.54□□□□□ -0.08
TNFAIP3-208ENST00000615468 RTL5Q5HYW3 569 aaPredicted RBP14.53□□□□□ -0.08
TNFAIP3-208ENST00000615468 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.51□□□□□ -0.09
TNFAIP3-208ENST00000615468 TNIKQ9UKE5 1360 aa14.51□□□□□ -0.09
TNFAIP3-208ENST00000615468 NCAPD3P42695 1498 aa14.47□□□□□ -0.09
TNFAIP3-208ENST00000615468 SYNJ1O43426 1573 aa14.47□□□□□ -0.09
TNFAIP3-208ENST00000615468 ANP32CO43423 234 aa14.46□□□□□ -0.1
TNFAIP3-208ENST00000615468 P3H3Q8IVL6 736 aa14.45□□□□□ -0.1
TNFAIP3-208ENST00000615468 HIRIP3Q9BW71 556 aaPredicted RBP14.45□□□□□ -0.1
TNFAIP3-208ENST00000615468 PEG3Q9GZU2 1588 aa14.45□□□□□ -0.1
TNFAIP3-208ENST00000615468 EIF5BO60841 1220 aaKnown RBP14.43□□□□□ -0.1
TNFAIP3-208ENST00000615468 NOP58Q9Y2X3 529 aaKnown RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms