RNA–Protein interactions for RNA: ENST00000613177.1

TARDBP-214, Transcript of TAR DNA binding protein, humanhuman

TSL 3

Gene TARDBP, Length 379 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-214ENST00000613177 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.69□□□□□ -2.31e-41■■■■■ 46.1
TARDBP-214ENST00000613177 U2AF2P26368 475 aaKnown RBP eCLIP1.78□□□□□ -2.128e-15■□□□□ 10.4
TARDBP-214ENST00000613177 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.21□□□□□ -1.741e-13■■■■■ 35.6
TARDBP-214ENST00000613177 TARDBPQ13148 414 aaKnown RBP eCLIP5.19□□□□□ -1.581e-13■■■■■ 26.9
TARDBP-214ENST00000613177 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.3□□□□□ -1.563e-13■□□□□ 8.3
TARDBP-214ENST00000613177 GRSF1Q12849 480 aaKnown RBP eCLIP4.08□□□□□ -1.761e-11■■□□□ 12.1
TARDBP-214ENST00000613177 SUB1P53999 127 aaKnown RBP eCLIP1.9□□□□□ -2.111e-11■□□□□ 9.4
TARDBP-214ENST00000613177 EIF4G2P78344 907 aaKnown RBP eCLIP9.38□□□□□ -0.918e-11■■□□□ 12.1
TARDBP-214ENST00000613177 KHSRPQ92945 711 aaKnown RBP eCLIP12.64□□□□□ -0.391e-10■■■■□ 25
TARDBP-214ENST00000613177 SRSF7Q16629 238 aaKnown RBP eCLIP5.15□□□□□ -1.592e-10■■■□□ 18.4
TARDBP-214ENST00000613177 FUSP35637 526 aaKnown RBP eCLIP1.23□□□□□ -2.213e-10■■□□□ 12.1
TARDBP-214ENST00000613177 ZRANB2O95218 330 aaKnown RBP eCLIP4.91□□□□□ -1.628e-10■□□□□ 10
TARDBP-214ENST00000613177 LSM11P83369 360 aaKnown RBP eCLIP12.41□□□□□ -0.423e-9■■□□□ 11.9
TARDBP-214ENST00000613177 RBM22Q9NW64 420 aaKnown RBP eCLIP1.55□□□□□ -2.165e-8■□□□□ 9.1
TARDBP-214ENST00000613177 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.42□□□□□ -1.547e-8■□□□□ 8.3
TARDBP-214ENST00000613177 ZC3H11AO75152 810 aaKnown RBP eCLIP4.4□□□□□ -1.711e-7■■□□□ 12
TARDBP-214ENST00000613177 CPSF6Q16630 551 aaKnown RBP eCLIP8.07□□□□□ -1.122e-7■■■■■ 27.5
TARDBP-214ENST00000613177 TIA1P31483 386 aaKnown RBP eCLIP2.59□□□□□ -1.994e-7■■■■□ 20.4
TARDBP-214ENST00000613177 TIAL1Q01085 375 aaKnown RBP eCLIP4.64□□□□□ -1.676e-7■■□□□ 11.7
TARDBP-214ENST00000613177 SRSF1Q07955 248 aaKnown RBP eCLIP4.78□□□□□ -1.648e-7■□□□□ 10.8
TARDBP-214ENST00000613177 SF3B4Q15427 424 aaKnown RBP eCLIP3.98□□□□□ -1.778e-7■■□□□ 12.3
TARDBP-214ENST00000613177 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.3□□□□□ -1.43e-6■□□□□ 10.1
TARDBP-214ENST00000613177 QKIQ96PU8 341 aaKnown RBP eCLIP1.55□□□□□ -2.163e-6■□□□□ 9.1
Retrieved 23 of 23 RNA–protein pairs in 5.8 ms